Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2 134 2e-26 seq1735 91.5 2e-13 >seq2 Length=295332 Score = 134 bits (148), Expect = 2e-26 Identities = 671/1048 (64%), Gaps = 33/1048 (3%) Strand=Plus/Minus Query 115659 TTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTC-ATCT 115717 ||| |||||||| ||||| || ||||| || ||||| | ||| ||| || | | Sbjct 211940 TTGTGATTGATCAATGAATGCACCTCGATCGGCAGCCATTTTAATG-CATGTTTTTACCG 211882 Query 115718 TGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTT 115777 |||||||||||| ||| |||| |||| || || | ||| || | || ||| Sbjct 211881 AGATTTCCCACACTGTTTTGTACAGGTCACGGATCTCTTTTGGAATTGTTTCTATGCTTT 211822 Query 115778 GGATAGAGCCACCTGCCTTGACCA--TGAGATCCTTCATATCCTTTGACCAGAGACCAAT 115835 |||| || ||| | | ||| | || | ||||||||| ||| || || || Sbjct 211821 GGATGGATCCA--TTATTGGACAAGATGTTGTTCTTCATATCGAGATCCCACAGCCCCAT 211764 Query 115836 CTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCG 115895 | | ||||| | || ||| || | || || || ||||| |||| | || Sbjct 211763 CGCAGTCAGATCTTGCAGGAGATGATGGTTCACCACCTGGAACTCGCCCGACAACACACG 211704 Query 115896 TCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGC 115955 || ||| | ||| | ||||| ||||| || |||||||||| ||||| ||||| || Sbjct 211703 TCGATTATAAACGTTCGATGTGTACGGCTCGAAAGACTCATTGTTGCCCAATATTTGCGC 211644 Query 115956 TGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAAT 116015 || || || || ||||| || |||| || | || || | || | || Sbjct 211643 CGTTGAAGCGGTCGGCATCGGAGCCAAAAGTAATGAATTACGAATTCCGTGCTTTGCTAT 211584 Query 116016 GCGTTCCTTGAGGGCGTCCCAGT--CGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCA 116073 ||| || | || |||||| | ||| | | | | ||| | |||||| || Sbjct 211583 CTTTTCTTTTAACTCGGCCCAGTTCCATAGATCCG--TCGGTTCCTTGTTCCACATTTCG 211526 Query 116074 AACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACC 116133 |||| | | |||| | | || ||| ||| | ||||| || || || || Sbjct 211525 TACTGTAATACGCCTTTGCTTACCGGACTTCCTTCATACGTCTCGTACGGACCGTCCCGT 211466 Query 116134 TCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCA 116193 || || || ||| | ||||| || || || | | || || || ||||| || | | Sbjct 211465 TCGGCTAACTCGCAACTCGCTTCCAGCGCACCATAGTAAATGGTTTCAAATATTTGTTGA 211406 Query 116194 TTCATTGCCTT--GGCCTCGTCGGAATCAAACGCGAGACGGCAC-AAAATAAATACATCC 116250 |||| || || |||||| ||| || ||| || | ||| ||||| ||| |||| Sbjct 211405 TTCA--GCTTTTGGGCCTCTTCGCTTTCGTACG-GATAGCGCATTAAAATGAATGCATCG 211349 Query 116251 GCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTC 116310 || | |||||| ||||||| ||||| || | || | ||| ||||| || | | Sbjct 211348 GCCATACCTTGCACACCGATTCCAATGGGCCTGTGGCGCATGTTAGAG---CGCTTCGCC 211292 Query 116311 TCC---ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTT 116367 ||| || ||||| | || ||||||| | | || ||||| || |||| ||| Sbjct 211291 TCCGGTACTGGATAGTAGTTGATATCGATTATTTTGTTCAGATTGCGCGTCACAATCTTA 211232 Query 116368 GTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCT--CTTCATTGACATACTTAG 116425 | || ||| | ||||||| | |||| || | | |||| ||| | |||| |||| Sbjct 211231 GCGACTTCCTTAAGCTTTACAAAATCGTAAGT-CTTGTCTGTCTTTACGAACATGTTTAG 211173 Query 116426 GAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAA 116485 | ||||| || |||||||||||||| | | || || || | |||||||| || Sbjct 211172 G----GCGATCGAAGCCAGATTACACACTGCAATTTCGTCTTTCGATGAGTACTCTACAA 211117 Query 116486 TTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG- 116544 | || || ||||| || || | ||| |||||||| | |||| |||||| | ||| | Sbjct 211116 TCTCTGTGCACAAGTTAGAGCACTTTATGGTGCCAACATTCTGTTGATT-GCTTTTACGA 211058 Query 116545 TTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 116604 || || ||||||||||| |||||||| || ||||| ||| || || | | || Sbjct 211057 TTGCATGCATCCTTGTACAGCATATACGGTACGCCCGTTTCCACCTGCGATTCAATGATT 210998 Query 116605 GCCTTCCATACATCGGCGGCTGGCACAGTGGCG-TTGGCTCGCCCCTCCTCCTCGTACTT 116663 || | ||| | ||| || || || || || ||| ||||||| |||||| Sbjct 210997 GCATACCACAAATCCTGTGCCCTTAC-TTGTCGAATGAATCGTCCCTCCTTCTCGTAACG 210939 Query 116664 TGTGTAGAGGGCCTCAAACTCTTCACCC 116691 ||||| || | ||| |||||||||||| Sbjct 210938 CGTGTACAGTGTCTCGAACTCTTCACCC 210911 >seq1735 Length=22919 Score = 91.5 bits (100), Expect = 2e-13 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 175899 TTGTGAAGATGTACCTCGTTTGAGACGCA-TCTTTGCCACCCATGAGACGCGTCCCAAAT 175957 ||||||| |||||||| | || ||| || || || ||| | | |||||| || || Sbjct 7248 TTGTGAAAATGTACCTAGGACTAG-CGCTGTCCTTTCCGCCCGTCAAACGCGTACCGAAC 7306 Query 175958 TGACCACATGGCTCAAGGAGATTGATATTGTTTGAGCCCATATAGTCATTCGCCAACTTG 176017 ||||||| || | || |||||||| ||||| || | |||| | |||||| ||| Sbjct 7307 TGACCACCCGGATAGAGCAGATTGATGTTGTTGCTTCCGACGTAGTTCTGCGCCAAATTG 7366 Query 176018 ACAATCGTATCCGCGAGGGAGACT--TCACCGTGATGGTAGGCCGACTTGTCCGCCACAT 176075 || ||||| | || | |||| ||||| ||||||||||| || || ||||| || Sbjct 7367 ACGATCGT--CGAACAGAGCGACTGCTCACCATGATGGTAGGCAGATTTCTCCGCAACCG 7424 Query 176076 ACGCCGCCAACTGCGCCACCTTCATCTCATCCTTG 176110 | | || | ||| |||||||||| |||| |||| Sbjct 7425 ATCCAGCAAGCTGGGCCACCTTCACCTCACGCTTG 7459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613383256207920