Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq5733 149 1e-30 seq2 107 3e-18 >seq5733 Length=11217 Score = 149 bits (164), Expect = 1e-30 Identities = 239/340 (70%), Gaps = 5/340 (1%) Strand=Plus/Plus Query 159745 CAGCAACCTGTCTGCCACAAATTCGATGTAGCTAC-ACATCTGCTCACAGTTGATCCCCA 159803 |||||| | || ||||| || || ||||| || | ||||| | || || || || || | Sbjct 2176 CAGCAAACGATCGGCCACGAACTCAATGTA-CTGCGACATCAGATCGCAATTCATACCGA 2234 Query 159804 GCAGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCA 159863 ||| || || || |||| || || ||| || | ||| ||| | ||||| || | Sbjct 2235 GCATGTCGACCGGCAGGGCTTTCGTCAAAAATTCTTGCTCGATCACAACCGCATCACGAA 2294 Query 159864 CAATCTGCGAGACACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGC 159923 || | || || || || | | || || | | ||| ||| |||| |||| Sbjct 2295 TGATGTCCGTCACGCGCTCCTTCGAGGGTTTCTGTACCA---GGTACTTGAACATCAGGC 2351 Query 159924 ACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGC 159983 | |||||||||||||||||||| ||||| || || || | |||||| || | | || | Sbjct 2352 AGGCAAAGTCGCAGTGCAGTCCTTCGTCGCGCGAAATCAGCTCGTTCGAGAACGTCAGTC 2411 Query 159984 CCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGA 160043 ||||||| | |||||| |||||||| |||||||| ||||| |||||| || |||| Sbjct 2412 CCGGCATCAGGCCACGCTTCTTGAGCCAGAAAATGGCGGCAAAGCTACCGCTGAAGAAGA 2471 Query 160044 TCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAA 160083 | || || ||||||||||||||||||| | || ||||| Sbjct 2472 TGCCTTCGACGGCCGCAAACGCCACGACACGTTCGCCAAA 2511 Score = 95.1 bits (104), Expect = 2e-14 Identities = 169/241 (70%), Gaps = 7/241 (3%) Strand=Plus/Plus Query 160205 ATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAA 160264 || ||| ||||||||| || |||||||||||| || || || |||||| ||| || Sbjct 2720 ATTAGCAGCGAGTACATCTCGCTGTGCACATTTTCCATCGCTATTTGAAAGCCGTAAAAG 2779 Query 160265 TATGTCGCCTCCAGATAC-TGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAAC 160323 | || ||| | ||| || |||||||| |||| | || |||| || | ||||| Sbjct 2780 CAGCGTGCTTCC-GTTACCTGTACCTCCTGACTGAAGCGTTCCACCAGGTTCTCGTTAAC 2838 Query 160324 CAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTT 160383 | || |||| || |||||||| || | |||||| ||||||||||| | ||| || Sbjct 2839 GATACCATCGGATGCGGCAAAGAAGGCAAGCACGTGCGAGATGAAATGACGTTCG-CTCG 2897 Query 160384 GTTGAGTC-TCTTTTCCCAGTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCC 160442 ||| || | |||||||| | ||| ||| | | | ||| ||||||||| || ||| Sbjct 2898 GTT---TCAGCGATTCCCAGTCTTTCATGTCCTTCGATAGATCGACCTCTTCCACGGTCC 2954 Query 160443 A 160443 | Sbjct 2955 A 2955 >seq2 Length=295332 Score = 107 bits (118), Expect = 3e-18 Identities = 309/473 (65%), Gaps = 2/473 (0%) Strand=Plus/Minus Query 203834 TTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTAC 203893 ||||| ||||||||||| || || || || || ||||| ||| || | | || ||| ||| Sbjct 212089 TTCGTTTTGTCCACCGTAAATTGGATCGCATTAACGGCCGGCTTGGTGCGCAAATAATAC 212030 Query 203894 ATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACG 203953 ||||| ||||| | ||| ||| ||| ||||| | || || || | || |||| | Sbjct 212029 ATGCCCGTCTTCAATCCCATCTTCCAGCCGTAGAAATGGATCGACGTGAGCTTGCCATAG 211970 Query 203954 TTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCT 204013 || || ||||| | ||| ||||| | || || ||| || ||||| | | ||||| Sbjct 211969 TTCGGCTCGGCTACGTGTATGTTGAACGATTGTGATTGATCAATGAATGCACCTCGATCG 211910 Query 204014 GCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTG 204073 || ||||| || || || || ||| || |||||||| || ||| ||| ||| | | Sbjct 211909 GCAGCCATTTTAATGCATGTTTTTACCGAGATTTCCCACACTGTTTTGTACAGGTCACGG 211850 Query 204074 GTGTGTTGAGGCACATCTTCCCACG-TCCTGATCGAGCCGTTGTCGGCCATCAGTCTCAT 204132 | | || || | | || | | | | ||| || || || | || || | | | Sbjct 211849 ATCTCTTTTGG-AATTGTTTCTATGCTTTGGATGGATCCATTATTGGACAAGATGTTGTT 211791 Query 204133 CCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGAT 204192 | || | || |||||| |||| | |||| || ||| || || |||| | Sbjct 211790 CTTCATATCGAGATCCCACAGCCCCATCGCAGTCAGATCTTGCAGGAGATGATGGTTCAC 211731 Query 204193 GATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAA 204252 | ||| || || || |||| ||| | ||| | | | ||| ||| | || ||||| Sbjct 211730 CACCTGGAACTCGCCCGACAACACACGTCGATTATAAACGTTCGATGTGTACGGCTCGAA 211671 Query 204253 CGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCA 204305 | ||| |||||||| || || || || || || || ||||| ||||||| Sbjct 211670 AGACTCATTGTTGCCCAATATTTGCGCCGTTGAAGCGGTCGGCATCGGAGCCA 211618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794994558770720