Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq48 152 6e-32 seq3723 120 3e-22 seq1402 116 4e-21 seq1141 91.5 2e-13 >seq48 Length=116589 Score = 152 bits (168), Expect = 6e-32 Identities = 175/234 (75%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||| | |||| ||||| || |||||| ||||| ||||||||||| Sbjct 116556 CCTCCACGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 116497 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| || |||| || |||||||| |||||||| ||||| |||||||| || | || Sbjct 116496 AGAGTACGTCCGTCTTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 116437 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGAT---TCC 46543 | || |||||||||| |||||| ||| | || | | |||||| |||| || Sbjct 116436 ATGCCCTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTC---CGATGGCTCG 116380 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || |||| ||||||||| ||||| |||||||| || || ||||| |||||| || Sbjct 116379 ACCTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCATTCTG 116326 >seq3723 Length=15797 Score = 120 bits (132), Expect = 3e-22 Identities = 158/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||||||| | ||| ||||| || || |||||||| ||||| ||||| | Sbjct 4027 CGCAGCACCAGATGGAGGGTAGATTCCTTCTGAATGTTGTAGTCCGATAGTGTGCGGCCA 4086 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||||||||| || | |||||||| || | || | | ||||||| Sbjct 4087 TCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTG 4146 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGAT---TCCACATCCACCGTG 46555 ||| |||||| ||| | | | | |||||| |||| || || || | ||| Sbjct 4147 TCCTGGATCTTTGCCTTCACATTTTCGATCGTGTC---CGATGGCTCGACCTCAAGTGTG 4203 Query 46556 ATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| ||||| || |||||||| || || || ||||| Sbjct 4204 ATGGTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCAT 4241 >seq1402 Length=30251 Score = 116 bits (128), Expect = 4e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| || | || |||||| || || ||||||||||| || ||||| |||| || Sbjct 9250 CACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGTGTGCGACCGTCCTC 9191 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||| ||||| || |||| |||||||| || | ||| | || |||||| ||| Sbjct 9190 CAGCTGCTTACCGGCAAAGATCAGACGCTGCTGATCCGGCGGGATGCCCTCCTTATCCTG 9131 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||||| ||| | || | | ||| || | || || || | || ||||| || Sbjct 9130 GATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTCTT 9071 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGCAC 46600 ||||| || ||||| || ||||| ||||| ||| || Sbjct 9070 ACCCGTGAGGGTTTTGACGAAGATCTGCATCTTGAAC 9034 >seq1141 Length=30375 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| ||||| || |||||| ||||| ||||||||||| ||||| || |||| || Sbjct 30272 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCTTCC 30331 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 |||||||| |||||||| ||||| |||||||| || Sbjct 30332 AGCTGCTTACCGGCGAAGATCAAACGCTGCTGATC 30366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565124207712240