Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq5733 251 7e-62 seq3723 145 8e-30 seq48 118 1e-21 seq1402 105 7e-18 >seq5733 Length=11217 Score = 251 bits (278), Expect = 7e-62 Identities = 308/414 (74%), Gaps = 10/414 (2%) Strand=Plus/Plus Query 132730 TCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCA-GACGCAC 132788 |||||||||||||| ||||| |||||||| |||||||| | || |||| | || || Sbjct 2186 TCGGCCACGAACTCAATGTACTGCGACATCAGATCGCAATTCATACCGAGCATGTCG-AC 2244 Query 132789 CGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCT 132848 |||||| |||| || | ||| ||||||||| | ||||| || | ||| ||| | Sbjct 2245 CGGCAGGGCTTTCGTCAAAAATTCTTGCTCGATCACAACCGCATCACGAATGATGTCCGT 2304 Query 132849 AACGCGCGCCGCGCTCGGCCGTTGC---ACCAAATGCTTGAACATCAAGCAAGCAAAGTC 132905 |||||| || ||| ||| | |||| | ||||||||||| ||| |||||||| Sbjct 2305 CACGCGCTCCT---TCGAGGGTTTCTGTACCAGGTACTTGAACATCAGGCAGGCAAAGTC 2361 Query 132906 GCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAG 132965 ||| |||| || ||||| | ||||| || ||||| ||| |||| || ||||| || Sbjct 2362 GCAGTGCAGTCCTTCGTCGCGCGAAATCAGCTCGTTCGAGAACGTCAGTCCCGGCATCAG 2421 Query 132966 GCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGAC 133025 ||| || || |||||||| || |||||||| || || || ||||||| ||| ||||| Sbjct 2422 GCCACGCTTCTTGAGCCAGAAAATGGCGGCAAAGCTACCGCTGAAGAAGATGCCTTCGAC 2481 Query 133026 GGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAG 133085 |||||| || ||||| | || ||||| || |||| | ||||| | ||||||| ||| Sbjct 2482 GGCCGCAAACGCCACGACACGTTCGCCAAAGTTGGCCTTCTTGCTCGAGATCCAGTTCAG 2541 Query 133086 CGCCCATTCGGCCTT-TTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACA 133138 ||||| || ||||| |||||| |||||||||| |||||| ||||| || |||| Sbjct 2542 TGCCCAGTCTGCCTTCTTCTTT-ACGCACGGCAACGTTTCAATGGCATTGAACA 2594 Score = 161 bits (178), Expect = 1e-34 Identities = 198/268 (74%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 133161 ACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGAT 133220 ||| | ||| |||||||| || ||| ||||| || ||| || || ||||| || || Sbjct 2704 ACGAATGTACGTGTCGATTAGCAGCGAGTACATCTCGCTGTGCACATTTTCCATCGCTAT 2763 Query 133221 TTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGAC 133280 |||||||||||||||||| || || || ||||| || || ||| ||| || || || Sbjct 2764 TTGAAAGCCGTAAAAGCAGCGTGCTTCCGTTACCTGTACCTCCTGACTGAAGCGTTCCAC 2823 Query 133281 CAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAA 133340 ||| || ||||| ||||| || ||| ||||| || ||||| ||||||||| |||||| Sbjct 2824 CAGGTTCTCGTTAACGATACCATCGGATGCGGCAAAGAAGGCAAGCACGTGCGAGATGAA 2883 Query 133341 ATGGCGCTCGTTGTCGTTCAAGCG-CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCT 133399 ||| || ||| | ||| |||| |||||||| | ||||||| || || || |||| Sbjct 2884 ATGACGTTCGCT-CGGTTTCAGCGATTCCCAGTCTTTCATGTCCTTCGATAGATCGACCT 2942 Query 133400 CCTCGACGGTCCAAAACGACGCCTCGGC 133427 | || |||||||| || || || || || Sbjct 2943 CTTCCACGGTCCAGAAGGAAGCTTCCGC 2970 >seq3723 Length=15797 Score = 145 bits (160), Expect = 8e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||||||||| ||||| |||||||| | || |||||| | | Sbjct 4241 ATGCAGATTTTCGTGAAAACGCTCACCGGCAAGACCATCACACTTGAGGTCGAGCCATCG 4182 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | || | ||| |||| ||||| |||||||| ||| | || || Sbjct 4181 GACACGATCGAAAATGTGAAGGCAAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAG 4122 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | ||| ||||| |||||||| || | ||||| || ||||||||| Sbjct 4121 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACACTATCGGACTACAAC 4062 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || || |||||| | || || ||| |||||||||| Sbjct 4061 ATTCAGAAGGAATCTACCCTCCATCTGGTGCTGCG 4027 >seq48 Length=116589 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || ||||| || ||||| |||||||| | || |||||| | | Sbjct 116329 AATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGAGCCATC 116388 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | |||| | || | || |||| ||||| ||||| ||||| | || | Sbjct 116389 GGACACGATCGAGAACG-TGAAGGCTAAGATCCAGGACAAGGAGGGCATTCCTCCAGATC 116447 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| | || | ||| || || |||||||| |||| || || || |||||||| Sbjct 116448 AGCAGCGTTTGATCTTCGCCGGTAAGCAGCTGGAAGACGGACGTACTCTGTCCGACTACA 116507 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| |||| |||| ||||| || ||| || | || || Sbjct 116508 ACATCCAGAAGGAGTCGACCTTGCACTTGGTCCTCCGTCTGCGTGGAGG 116556 >seq1402 Length=30251 Score = 105 bits (116), Expect = 7e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| ||||| |||||||| || ||||| ||| | || |||||| || Sbjct 9038 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCC 9097 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-A 38359 | || | | | | | || | || |||| || || ||||| || ||||||| | Sbjct 9098 TCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCAT-CCCGCCGGA 9156 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||||| || || | || || || |||||||| |||| ||||| || |||||| Sbjct 9157 TCAGCAGCGTCTGATCTTTGCCGGTAAGCAGCTGGAGGACGGTCGCACACTGTCCGACTA 9216 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| || ||||| | || || || ||||||| || || | || ||| Sbjct 9217 CAACATTCAGAAGGAGTCCACCCTTCACCTGGTGCTTCGCCTGCGCGGTGGC 9268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500071752590080