Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1095 131 1e-24 seq6608 91.5 1e-12 >seq1095 Length=35156 Score = 131 bits (144), Expect = 1e-24 Identities = 551/865 (64%), Gaps = 14/865 (2%) Strand=Plus/Minus Query 517851 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 517910 |||| |||| ||||||| ||||| | ||||| | | || ||||| || || || | Sbjct 22841 AATCGGTTCCCTCGAACAGCGAATCGATCTCAATGCTGGCCTGCGTCGACGAGGACAGCG 22782 Query 517911 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTT--TTGCTGATTGATT 517968 ||| || ||||| || ||||| || | || | || | ||| ||| || | || Sbjct 22781 TACGCTTTGCACGCTCGCATGCCGTGCGCAGACGACGCAGGGCACGCTTGTTGGTGGA-- 22724 Query 517969 CAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATC 518028 || ||| | || | ||| | |||||| || | | | | | || ||||| || || Sbjct 22723 CAGATCCTTCTTGTGTTTACGCTTGAATTCCTGAGCGAAGTGGTTCACCAGACGGTTGTC 22664 Query 518029 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 518088 || || ||||| |||| | ||| | ||| | || | | || | ||| | ||||| Sbjct 22663 GAAGTCCTCACCACCCAGATGAGTGTCTCCGGCGGTCGACTTGACCTCGAAGATACCATC 22604 Query 518089 TTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 518148 || | |||| | | ||||| ||| || ||||| | ||| || || || ||||| Sbjct 22603 GTCGATGGACAGGATCGACACATCGAAGGTACCGCCACCAAGATCGAAGATCAGCACATT 22544 Query 518149 CATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATT 518208 || | || || || || ||||| || |||| || || || || || || || Sbjct 22543 GCGCTCACCGGCTGTCTTCTTGTCCAGACCGTAGGCAATGGCGGCTGCGGTCGGCTCGTT 22484 Query 518209 AATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTG 518268 || || | || || || | || | ||| |||| ||||| || || || || | || Sbjct 22483 GATGATACGCAGCACGTTCAATCCTGAAATGGTTCCGGCATCCTTCGTCGCCTGGCGCTG 22424 Query 518269 TGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATA 518328 ||||| || || || || || || ||||| ||||| | || || || || | || Sbjct 22423 CGAATCATTGAAGTAGGCTGGCACGGTAATGACGGCGTTTGTAACCGTCTTGCCCAGGTA 22364 Query 518329 AGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGA--- 518385 ||| ||||||| ||||| || | | | ||| || | | ||| ||| | Sbjct 22363 AGCTTCGGCCGTTTCCTTCATCTTGGTCAGCACCATCGAACTGACCTCTTCCGGGAAGAA 22304 Query 518386 ATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAAT 518445 | ||| ||| | || | || || ||| | |||||| || || | Sbjct 22303 ACATTTCTTCTCGCCCTTGT---ATTCGACCGCAATCTTTGGTTTGC--CCTCGATCGAC 22249 Query 518446 A--ACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTA 518503 || | || ||||||| ||||| || | || | | || | ||| | | Sbjct 22248 TCCACCTCGAACGGCCAGTGCTTCATGTCGGCCTGGATGGCGGGATCGTCAAACTTACGG 22189 Query 518504 CCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTG 518563 ||||| | || || ||||| || || |||||||| || || || || | || | ||| Sbjct 22188 CCAATCAGACGCTTGGCATCGAAGATTGTATTGGTCGGGTTCATGGCCACCTGGTTCTTG 22129 Query 518564 GCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGA 518623 || ||||| ||||||||| | || || || || || | |||||| ||||| || || || Sbjct 22128 GCAGCATCGCCAATCAGACGCTCCGTGTCAGTGAAGGCAACATACGATGGTGTGGTTCGG 22069 Query 518624 TTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTA 518683 || || || ||||| ||||| ||||| ||||| || | || | || || ||||| || Sbjct 22068 TTTCCCTGGTCATTGGCAATGATTTCTACTTTGCCGTGCTGGAACACTCCGACACAGCTG 22009 Query 518684 AAAGTTGTTCCTAAATCAATACCAA 518708 | || || || | ||||||||||| Sbjct 22008 TAGGTCGTGCCCAGATCAATACCAA 21984 >seq6608 Length=7582 Score = 91.5 bits (100), Expect = 1e-12 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 870812 TCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACTATTATTGGT 870871 || || || ||| | ||||| ||||||||| | || ||||| | || || || |||||| Sbjct 1141 TCGTCGCCCAATGTGGCTAAGGAAATGCATGTCGGGCATTTGCGTTCGACCATAATTGGT 1200 Query 870872 GAATCTATTTGTAGGGTATTAGAAATGTGTGGAC-ACGATGTTTATCGTATTAATCATGT 870930 || || |||||| | | | || | ||||| | | ||||| ||||||||| ||| | Sbjct 1201 GATTCGATTTGTCGTTTCCTGGAGTT-TGTGGGCCATGATGTACTTCGTATTAACCATAT 1259 Query 870931 GGGTGATTGGGGAACTCAATTCGGTATGTTAATTGCT 870967 || || |||||||| || || || |||||||||||| Sbjct 1260 CGGAGACTGGGGAACGCAGTTTGGCATGTTAATTGCT 1296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780020388322372