Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1735 98.7 1e-15 seq5733 84.2 3e-11 >seq1735 Length=22919 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 176890 GGCATCACGAACATTCTTACA-CTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGAC 176948 ||| || || |||||| ||| ||| || || || || || || |||||| ||| |||| Sbjct 8188 GGCTTCTCGCACATTCA-ACAGCTTACCGCGCAGCGGAAACACTCCGTAGGTATCACGAC 8246 Query 176949 CAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGA 177008 | ||||| | ||| | ||| || | |||||| || ||||| ||||| || | |||| Sbjct 8247 CGACCACTCCCAAACCGGAAACGGCCAACGTTTTGGCCGAATCTCCCTCGGTGAGAATGA 8306 Query 177009 GTGTACACTTGCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAATAC 177068 ||||||| ||| || | || |||||| | ||| || || |||| || ||||||| Sbjct 8307 GTGTACAGTTGAGTGAATTACGCGAACCCGCATCGTTAGCGTCTTCCAGCTTCGGAATAC 8366 Query 177069 CAGTAATTTTGGACTT 177084 | |||| |||||||| Sbjct 8367 CCTTAATCTTGGACTT 8382 >seq5733 Length=11217 Score = 84.2 bits (92), Expect = 3e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 ||||| || || || | || |||||| || || || ||||||||| ||| ||| Sbjct 2512 CTTTGGCGAACGTGTCGTGGCGTTTGCGGCCGTCGAAGGCATCTTCTTCAGCGGTAGCTT 2453 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 ||| |||| |||||||||||||| || || ||||| || || ||||| ||||| Sbjct 2452 TGCCGCCATTTTCTGGCTCAAGAAGCGTGGCCTGATGCCGGGACTGACGTTCTCGAACGA 2393 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||| || || || ||||| ||||| ||| || ||||| Sbjct 2392 GCTGATTTCGCGCGACGAAGGACTGCACTGCGACTTTGC 2354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620616994516640