Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2 163 3e-35 seq1735 89.7 6e-13 >seq2 Length=295332 Score = 163 bits (180), Expect = 3e-35 Identities = 526/802 (66%), Gaps = 27/802 (3%) Strand=Plus/Minus Query 105934 ATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 105993 ||| | ||||| ||||| || || || | ||||| || ||||| ||||| || || || Sbjct 211697 ATAAACGTTCGATGTGTACGGCTCGAAAGACTCATTGTTGCCCAATATTTGCGCCGTTGA 211638 Query 105994 GGCTGTTGGCATTGGTGCCATCAAAAGACTG--TTACGAAGACCCT--TTTCCTTGATGC 106049 || || ||||| || |||| ||| | || ||||||| || | ||| || || Sbjct 211637 AGCGGTCGGCATCGGAGCCA--AAAGTAATGAATTACGAATTCCGTGCTTTGCT--ATCT 211582 Query 106050 GTTCCTTGAGAACATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATATCAAA 106107 ||| || | | |||||| | ||| | | | |||| | |||| |||| || | Sbjct 211581 TTTCTTTTAACTCGGCCCAGTTCCATAGATCCG-TCGGTTCCTTGTTCC-ACATTTCGTA 211524 Query 106108 TTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTC 106167 || | || |||| | ||| || ||| | ||||| || | ||| | ||| Sbjct 211523 CTGTAATACGCCTTTGCTTACCGGACTTCCTTCATACGTCTCGTACGGACCGTCCCGTTC 211464 Query 106168 AGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATT 106227 || || || || ||||| ||||| | | | || ||||||||||| || | ||| Sbjct 211463 GGCTAACTCGCAACTCGCTTCCAGCGCACCATAGTAAATGGTTTCAAATATTTGTTGATT 211404 Query 106228 CATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAG 106287 || || | ||| || || || | | ||||| ||||| ||| |||| || | Sbjct 211403 CAGCTTTTGGGCCTCTTCGCTTTCGTACGGATAGCGCATTAAAATGAATGCATCGGCCAT 211344 Query 106288 ACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA-- 106345 |||||| ||||| | ||||| || ||||| ||||| ||||| ||| | ||| Sbjct 211343 ACCTTGCACACCGATTCCAATGGGCCTGTGGCGCATGTTAGAG---CGCTTCGCCTCCGG 211287 Query 106346 -ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGAT 106404 || ||||| | || | || || | | ||| ||||| || |||||||| | || Sbjct 211286 TACTGGATAGTAGTTGATATCGATTATTTTGTTCAGATTGCGCGTCACAATCTTAGCGAC 211227 Query 106405 TTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCT--CTTCATTGACATACTTTGGAAGG 106462 ||| | ||| ||| || |||| |||| | |||| ||| | |||| || ||| Sbjct 211226 TTCCTTAAGCTTTACAAAATCGTAAGT-CTTGTCTGTCTTTACGAACATGTTT----AGG 211172 Query 106463 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 106522 ||||| || |||| ||| || || || | || || || || |||||||| ||| ||| Sbjct 211171 GCGATCGAAGCCAGATTACACACTGCAATTTCGTCTTTCGATGAGTACTCTACAATCTCT 211112 Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCAC 106582 || |||||||| || | ||| || || || | ||||| ||| || || || ||||| Sbjct 211111 GTGCACAAGTTAGAGCACTTTATGGTGCCAACATTCTGTTGATTGCTTTTACGATTGCAT 211052 Query 106583 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTC 106642 ||||||||||| ||||| || || ||||| ||| ||| || | | ||||| | | Sbjct 211051 GCATCCTTGTACAGCATATACGGTACGCCCGTTTCCACCTGCGATTCAATGATTGCATAC 210992 Query 106643 CACACATCGGCGGCTGGTACAATGGCG-TTGGCCCGTCCCTCCGCCTCGTACTTTGTGTA 106701 |||| ||| || ||| || || || ||||||||| |||||| ||||| Sbjct 210991 CACAAATCCTGTGCCCTTAC-TTGTCGAATGAATCGTCCCTCCTTCTCGTAACGCGTGTA 210933 Query 106702 GAGGGCTTCAAACTCCTCACCC 106723 || | || ||||| |||||| Sbjct 210932 CAGTGTCTCGAACTCTTCACCC 210911 >seq1735 Length=22919 Score = 89.7 bits (98), Expect = 6e-13 Identities = 153/218 (70%), Gaps = 12/218 (6%) Strand=Plus/Plus Query 168442 TTGTGAAAATGTACCTCGTCTGAGAAGC---ATCCTTACCACCCATGAGACGCGTACCAA 168498 |||||||||||||||| | || ||| ||||| || ||| | | ||||||||| | Sbjct 7248 TTGTGAAAATGTACCTAG---GACTAGCGCTGTCCTTTCCGCCCGTCAAACGCGTACCGA 7304 Query 168499 ATTGACCACACGGTTCAAGAAGGTTAATGTTGTTTGAACCCGTGTAGTCGTTTGCCAACT 168558 | ||||||| ||| | || || || |||||||| || ||||| | ||||| | Sbjct 7305 ACTGACCACCCGGATAGAGCAGATTGATGTTGTTGCTTCCGACGTAGTTCTGCGCCAAAT 7364 Query 168559 TAACAATCGTGTCCGCTAAG-GATACT--TCACCATGGTGGTACGCAGACTTGTCCGCGA 168615 | || ||||| || || | ||| |||||||| ||||| ||||| || ||||| | Sbjct 7365 TGACGATCGT---CGAACAGAGCGACTGCTCACCATGATGGTAGGCAGATTTCTCCGCAA 7421 Query 168616 CATATGCCGCCAGTTGTGCCACCTTCATTTCATCCTTG 168653 | || | || || || |||||||||| ||| |||| Sbjct 7422 CCGATCCAGCAAGCTGGGCCACCTTCACCTCACGCTTG 7459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589861609128880