Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1402 105 4e-18 seq3723 95.1 8e-15 seq48 84.2 1e-11 >seq1402 Length=30251 Score = 105 bits (116), Expect = 4e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| ||| || ||||||||||| ||||| || || | || | || ||| Sbjct 9249 ACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGTGTGCGACCGTCCTCC 9190 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || |||||||| || || || ||||| || |||| | |||||||| || Sbjct 9189 AGCTGCTTACCGGCAAAGATCAGACGCTGCTGATCCGGCGGGATGCCCTCCTTATCCTGG 9130 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 |||||| || || || || |||| || || ||| || || | ||| ||||| | Sbjct 9129 ATCTTCGCCTTCAC--ATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTCT 9072 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | |||||||| || || || ||||||||||| || Sbjct 9071 TACCCGTGAGGGTTTTGACGAAGATCTGCATCTT 9038 >seq3723 Length=15797 Score = 95.1 bits (104), Expect = 8e-15 Identities = 140/197 (71%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||||||||| |||||||| || | || |||| |||||||| || ||||| || Sbjct 4050 TTCCTTCTGAATGTTGTAGTCCGATAGTGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAA 4109 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || ||||| ||| | || | ||||||||||| ||||| || || Sbjct 4110 GATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTTTGCCTTCACATT 4169 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | |||| || | ||| || || | || ||||| || || ||||| || ||||| Sbjct 4170 TTCGATCGTGTCCGATGGCTCGACCTCAAGTGTGATGGTCTTGCCGGTGAGCGTTTTCAC 4229 Query 34970 AAAGATCTGCAT-ATTC 34985 || |||||||| |||| Sbjct 4230 GAAAATCTGCATGATTC 4246 >seq48 Length=116589 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||| ||||| || || | ||| | || ||| Sbjct 116538 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCTTCC 116479 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || | || ||||| ||| | || | ||||||||||| Sbjct 116478 AGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGG 116419 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || ||| | |||| || | ||| || || | || ||||| || Sbjct 116418 ATCTTAGCCTTCACGTTCTCGATCGTGTCCGATGGCTCGACCTCCAGCGTGATGGTCTTG 116359 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || |||||||| ||||||||||| Sbjct 116358 CCAGTCAGCGTCTTCACGAAGATCTGCAT 116330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324569655499536