Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2 217 2e-51 seq5733 89.7 6e-13 >seq2 Length=295332 Score = 217 bits (240), Expect = 2e-51 Identities = 838/1312 (64%), Gaps = 31/1312 (2%) Strand=Plus/Minus Query 47541 CCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCA 47600 ||||| |||| |||| || | ||| || | || ||||||| ||| || | || Sbjct 211513 CCTTTGCTTACCGGACTTCCTTCATACGTCTCGTACGGACCGTCCCGTTCGGCTAACTCG 211454 Query 47601 CAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTT 47660 ||||| ||||||| |||| ||| || || ||||||||||||| | || || || Sbjct 211453 CAACTCGCTTCCAGCGCACCATAGTAAATGGTTTCAAATATTTGTTGATTCAGCTTTTGG 211394 Query 47661 GCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACA 47720 || ||| ||| | ||||| |||| ||| |||| ||||| ||| Sbjct 211393 GCCTCTTCGCTTTCGTACGGATAGCGCATTAAAATGAATGCATCGGCCATACCTTGCACA 211334 Query 47721 CCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTG 47780 || || ||||| || || || | ||||| || || || |||| |||||| | | Sbjct 211333 CCGATTCCAATGGGCCTGTGGCGCATGTTAGAGCGCTTCGCCTCCGGTACTGGATAGTAG 211274 Query 47781 TTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAA--TT 47838 || ||||| || ||||| || ||| | | ||| ||||| || Sbjct 211273 TTGATATCGATTATTTTGTTCAGATTGCGCGTCACAATCTTAGCGACTTC-CTTAAGCTT 211215 Query 47839 TATTAAAATCAAA---CTTGTTATTTATAACAAACCTATTAAGTGCTATAGATGCTAGAT 47895 || |||||| | ||||| | | || ||| | || || || || || || |||| Sbjct 211214 TAC-AAAATCGTAAGTCTTGTCTGTCTTTACGAACATGTTTAGGGCGATCGAAGCCAGAT 211156 Query 47896 TACATACAGCTACCTCAT--TTGGATTAGTATATTGTATTATTTCAGCACATAGATTACC 47953 |||| || || | || | || ||| |||| | | | | | ||||| || ||| Sbjct 211155 TACACACTGCAATTTCGTCTTTCGATGAGTACTCTACAATCTCTGTGCACA-AG-TTAGA 211098 Query 47954 ACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAG 48013 || || || || || | ||| || ||||| | || ||||| |||||||| || Sbjct 211097 GCACTTTATGGTGCCAACATTCTGTTGATTGCTTTTACGATTGCATGCATCCTTGTACAG 211038 Query 48014 CATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTA-G 48072 |||| | ||| || ||||| | ||| ||||||||||| | | ||| | | |||| | Sbjct 211037 CATATACGGTACGCCCGTTTCCACCTGCGATTCAATGATTGCATACCACAAA-TCCTGTG 210979 Query 48073 CCTTTA--TAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAA 48130 || ||| | | | | | | | | | ||||| || || | |||| || Sbjct 210978 CCCTTACTTGTCGAATGAATCGTCCCT--CCTTCTCGTAACGCGTGTACAGTGTCTCGAA 210921 Query 48131 TTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATC 48190 || || || | | | ||||||||||| || | ||| ||||||| ||| || Sbjct 210920 CTCTTCACCCCAAGTTTCCGCCAACCCAGGACAATCGTGAGGGCACATCA--GAC---TC 210866 Query 48191 CTCATCATTTTTTA--CTCTAG-----TCATAAATATATCTGGTATCCAAAGAGCTATAA 48243 | ||| || ||| ||||| ||||||| | ||| |||||||| | ||| | Sbjct 210865 CACAT--TTCGTTAGCCTCTACCCGTTTCATAAACAGATCCGGTATCCACAAAGCGTAGA 210808 Query 48244 ATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCA 48303 | | || | | | | || || ||||| | || | || || || ||||| || | Sbjct 210807 ACATGTCACGTGCACGCACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCGA 210748 Query 48304 TTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTC 48363 || |||| ||||||||||||| | ||||| || | | || |||||||| || || | Sbjct 210747 ATACATCACCATGCCATGGTTCGAGGTATATGGCAAAAGCTCCCGGTCGTTTGTTGCCAC 210688 Query 48364 CTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTG 48423 | ||||| | ||||| ||| || ||||| || |||| | ||| || || | || || | Sbjct 210687 CCTGATCCACATATCGGGCTGTGTTGTTGTACACTCGCAGCATCGGTACCAACCCGTTCG 210628 Query 48424 ATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATAC 48483 | || || || || || || || || |||| | || | ||| || | | Sbjct 210627 AAATCCCGTTCGTGCCTGAGATGTACGTTCCCTTCGCGCGAATACAGTGAACATTCAGCC 210568 Query 48484 CTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTT 48543 | || || ||||| ||| || || || |||||| | || || |||||||| || |||| Sbjct 210567 CAATTCCGCCTGCTGATTTTGAAATCAGCGCACACTGCTTTAGCGTATCATAGATACCTT 210508 Query 48544 CTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTC 48603 | |||||||| || ||| ||| ||||||||| |||| || ||| | || Sbjct 210507 CAATACTATCGTCAGACATGGTTAGCAGAAAACAAGATGACAGCTGTGGACGTTGCGTAG 210448 Query 48604 CTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATG 48663 ||| ||| | || || || ||||| |||| | ||| || | ||| || |||| Sbjct 210447 CTGCCGCAAACATGGTCGGTGAGGCATGGGTAAAATAACGCTCCGAAAGCAAGTTGTATG 210388 Query 48664 TTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATAT 48723 | || || | | ||| || || ||||||||| || | || ||||| ||||| | Sbjct 210387 TCTCGATGGCTGCATCGATGTCTTCACCATGTATACCGATCGCAACGCGCATCAACATGT 210328 Query 48724 ATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTT 48783 || || | ||||||||| || || || ||||| | ||| || ||||||||||| Sbjct 210327 GCTGCGGACGTTCAACAATCTTACCCTTGATCTTCAACAAATAGGACCGTTCCAATGTTT 210268 Query 48784 TAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATTGATGAATT 48835 | || ||||| ||||||||| ||| ||| ||| | ||| || | ||||| Sbjct 210267 TGAACCCAAAGTAGTTGTATCCAAAATCGCGATCGTAAATGATGGCCGAATT 210216 >seq5733 Length=11217 Score = 89.7 bits (98), Expect = 6e-13 Identities = 174/257 (68%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 18949 TTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTA 19008 || ||||||| || ||||| || || || ||||| ||||| | |||| || || Sbjct 2339 TTGAACATCAGGCAGGCAAAGTCGCAGTGCAGTCCTTCGTCGCGCGAAATCAGCTCGTTC 2398 Query 19009 GAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGAT 19068 || || || | || |||||||| || | || || | |||||| || | ||||| Sbjct 2399 GAGAACGTCAGTCCCGGCATCAGGCCACGCTTCTTGAGCCAGAAAATGGCGGCAAAGCTA 2458 Query 19069 CCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCA 19128 || ||||| || ||||| || || ||||| || || | | ||| ||| | | || Sbjct 2459 CCGCTGAAGAAGATGCCTTCGACGGCCGCAAACGCCACGACACGTTCGCCAAAGTTGGCC 2518 Query 19129 TCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTC 19188 | || | ||||| ||||||||||| || |||||||| ||||| || |||| || Sbjct 2519 TTCTTGCTCGAGATCCAGTTCAGTGCCCAGTCTGCCTTCTTCTTTACGCACGGCAACGTT 2578 Query 19189 TCTATAGAATTAAATAG 19205 || || | ||| || || Sbjct 2579 TCAATGGCATTGAACAG 2595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561995239969680