Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1095 122 7e-22 seq6608 91.5 1e-12 >seq1095 Length=35156 Score = 122 bits (134), Expect = 7e-22 Identities = 362/547 (66%), Gaps = 16/547 (3%) Strand=Plus/Plus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 ||||| ||| | || || || || || ||||| || || | || | || ||||| ||| Sbjct 21986 GGTATTGATCTGGGCACGACCTACAGCTGTGTCGGAGTGTTCCAGCACGGCAAAGTAGAA 22045 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || ||||||||||| || || ||| |||| || ||||| |||||| | ||||| || || Sbjct 22046 ATCATTGCCAATGACCAGGGAAACCGAACCACACCATCGTATGTTGCCTTCACTGACACG 22105 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTAATCCTACCAATACT 550174 || | | | |||| ||||| || || | || |||| || || || |||||||| Sbjct 22106 GAGCGTCTGATTGGCGATGCTGCCAAGAACCAGGTGGCCA-TG--AACCCGACCAATACA 22162 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 || || ||||| || ||| | ||||| | | ||| | ||| | | | ||||| || Sbjct 22163 ATCTTCGATGCCAAGCGTCTGATTGGCCGTAAGTTTGACGATCCCGCCATCCAGGCCGAC 22222 Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTC--TGGAAAACCTTATATTGAAG-CT 550291 |||||||| ||||| ||| | | | | | || || ||||| | |||| | | Sbjct 22223 ATGAAGCACTGGCCGTTCGAGGTGG--AGTCGATCGAGGGCAAACCAAAGATTGCGGTCG 22280 Query 550292 ACT-CATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAAT 550350 | | || | || | ||| || | || ||| | | || ||||| | | Sbjct 22281 AATACAAGGGCGAGAAG--AAATGTTTCTTCCCGGAAGAGGTCAGTTCGATGGTGCTGAC 22338 Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AGTTACGGATGCAGTAATAA 550409 || ||||| |||| ||| || || ||| ||||| ||||| | || || || | Sbjct 22339 CAAGATGAAGGAAACGGCCGAAGC-TTACCTGGGCAAGACGGTTACAAACGCCGTCATTA 22397 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 | || ||||| || || ||||| || || || || || || || ||||| ||| ||| Sbjct 22398 CCGTGCCAGCCTACTTCAATGATTCGCAGCGCCAGGCGACGAAGGATGCCGGAACCATTT 22457 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529 | ||| | || || || ||||| ||||| || || || || || || |||| || || | Sbjct 22458 CAGGATTGAACGTGCTGCGTATCATCAACGAGCCGACCGCAGCCGCCATTGCCTACGGTC 22517 Query 550530 TTGATAA 550536 | || || Sbjct 22518 TGGACAA 22524 >seq6608 Length=7582 Score = 91.5 bits (100), Expect = 1e-12 Identities = 125/172 (73%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 930657 GTATTAATTGATTTTTCTTCACCAAATATTGCCAAAGAAATGCATATTGGACATTTGCGT 930716 ||| || |||| || || || || ||| | || || ||||||||| | || ||||||||| Sbjct 1126 GTAGTAGTTGACTTCTCGTCGCCCAATGTGGCTAAGGAAATGCATGTCGGGCATTTGCGT 1185 Query 930717 TCTACCATTATTGGAGAATCTTTATGTAGATTATATGAATATTGT-GGAAGTAAAGTTCA 930775 || ||||| ||||| || || | ||| | || || | |||| || | | || | Sbjct 1186 TCGACCATAATTGGTGATTCGATTTGTCG-TTTCCTGGAGTTTGTGGGCCATGATGTACT 1244 Query 930776 TCGAGTCAATCATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGCT 930827 ||| | || ||||| || || |||||||| || ||||| |||||||||||| Sbjct 1245 TCGTATTAACCATATCGGAGACTGGGGAACGCAGTTTGGCATGTTAATTGCT 1296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028441280549380