Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq3723 113 4e-20 seq2169 100 2e-16 seq48 89.7 4e-13 >seq3723 Length=15797 Score = 113 bits (124), Expect = 4e-20 Identities = 152/210 (72%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATA--GTTCTGGCATCGTCCAAT 101323 ||| ||||||||||| || || || ||||| || ||||| || | | |||| |||| Sbjct 4038 ATGGAGGGTAGATTCCTTCTGAATGTTGTAGTC--CGATAGTGTGCGGCCATCCTCCAGC 4095 Query 101324 TGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATT 101383 ||||| || || || || | |||||| ||||| || || || || || || || || || Sbjct 4096 TGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATC 4155 Query 101384 TTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCG 101443 ||| || ||| |||| | ||||| || | || || ||||| |||| || |||||| Sbjct 4156 TTTGCCTTCACATTTTCGATCGTGTCCGATGGCTCGACCTCAAGTGTGATGGTCTTGCCG 4215 Query 101444 GTTAAAGTTTTTACAAATATCTGCATGGTT 101473 || | ||||| || || ||||||||| || Sbjct 4216 GTGAGCGTTTTCACGAAAATCTGCATGATT 4245 >seq2169 Length=21917 Score = 100 bits (110), Expect = 2e-16 Identities = 172/250 (69%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 13652 TTGAATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGGTCGC 13711 || ||||| || || || || ||| | ||||||| || ||||| ||| | ||| ||| Sbjct 3969 TTAAATTTACGCTTGCAGCCCTCATAGTTCATGTAACGAATTTTGCCAAAAATTTCCCGC 3910 Query 13712 TCCATCCAGGCACGATCGTGAGTTCCGCATATTGACCACATGCAACCGGCATAACCGTTG 13771 ||| |||| | ||||||| |||| || ||||||||||| ||| | || ||||| Sbjct 3909 TCCTTCCATCCCTGATCGTGTATTCCCGCGATCGACCACATGCACCCGACGTACCCGTTC 3850 Query 13772 GGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGATTAAAGCCACT 13831 |||||||| ||||||| ||||| ||||| | ||| || || | | ||| | Sbjct 3849 GGATCGCGCCCATCCAGGCTGTACCGATCGTTCAGATAGATCGCCGTCTCGAGCGCCTCC 3790 Query 13832 GTAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCATATATCCGTGC 13891 || | | | ||| || | ||| || || ||||| || || | || | | |||||| Sbjct 3789 TCCGGTGTTTTCGTCCACTCCAGTATCTTCTTCGCCCAGTACATCCGCAGAAAGCCGTGC 3730 Query 13892 ATTTTGCCTT 13901 || ||||||| Sbjct 3729 ATCTTGCCTT 3720 >seq48 Length=116589 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | || || || | ||| || || || || || ||||| |||| Sbjct 116556 CCTCCACGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 116497 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | || |||| |||||||| || || ||||||||||| ||||| || ||| Sbjct 116496 AGAGTACGTCCGTCTTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 116437 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| || || || || || || || || | || | ||||| || | || || Sbjct 116436 ATGCCCTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGATGGCTCGACC 116377 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| || ||||| || | || || || || |||||||| Sbjct 116376 TCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 116330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396200343309834