Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq73 158 9e-34 seq1402 114 1e-20 seq3723 91.5 1e-13 seq48 89.7 4e-13 >seq73 Length=101597 Score = 158 bits (174), Expect = 9e-34 Identities = 218/305 (71%), Gaps = 0/305 (0%) Strand=Plus/Plus Query 8990 ATTAATTAGTACCGGTTGACCCAAACCCTCCCTCTCCGCGATTGGTGTCAGTCGTGGAAG 9049 |||| || |||||||| || || || ||||| | ||||| | || || || || | Sbjct 46551 ATTAGTTCGTACCGGTAGATCCGAAACCTCCTGCACCGCGTTCCGTATCCGTAAGCGACG 46610 Query 9050 TAACCTCTACCAGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCC 9109 || |||| ||| |||||| |||| ||| || || ||||| || || | || | Sbjct 46611 GAAGCTCTTCCAAATCCGGATAAGCTATTTTTTCGCAGATAAATTGTGCGATACGATCGC 46670 Query 9110 CCTTATTCACGACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCC 9169 | || || || | || |||| || ||||| ||||||||||| || || |||||||| | Sbjct 46671 CTTTCTTGACATCGAAATCTGCCTCCGAATGGTTGAACAGCACAACACCAACGTTACCAC 46730 Query 9170 TGTAATCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAG 9229 ||| |||||||| | || || || || || |||||||| | ||| ||||| ||||||| Sbjct 46731 GGTAGTCCTCATCAACGACGCCGGCTCCAACATCGATGAAATTCTTCACCGCCAGTCCAG 46790 Query 9230 AGCGGGGCGCGATTCGACCGTAGCATCCCACCGGTAATTGCACCCGCAAGTCGGTCATGA 9289 | ||||| || | || || |||||||| |||||| |||||| | | || ||||| | Sbjct 46791 AACGGGGAGCTACCCGTCCATAGCATCCTTCCGGTACCTGCACCTGAATATCAGTCATTA 46850 Query 9290 CCAGC 9294 | ||| Sbjct 46851 CAAGC 46855 >seq1402 Length=30251 Score = 114 bits (126), Expect = 1e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || | || || | ||||| || || ||| ||| || ||||| ||||| || | Sbjct 9269 CGCCACCGCGCAGGCGAAGCACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGG 9210 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 | || | ||| |||| |||| ||||||||||||||| ||||| ||||| ||||||| | Sbjct 9209 ACAGTGTGCGACCGTCCTCCAGCTGCTTACCGGCAAAGATCAGACGCTGCTGATCCGGCG 9150 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | ||||||||| || ||||| || ||| | | | || || | ||| | Sbjct 9149 GGATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGA 9090 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||| | ||||| || || ||||| | ||||| || || ||||||||| || Sbjct 9089 CCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTG 9037 >seq3723 Length=15797 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| ||| || || || || ||||| ||||| || ||||| | || Sbjct 4024 AGTCGCAGCACCAGATGGAGGGTAGATTCCTTCTGAATGTTGTAGTCCGATAGTGTGCGG 4083 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || || || ||||| ||||| | ||| | |||||| Sbjct 4084 CCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGGATTCCCTCC 4143 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | | || || | ||| ||||| | || Sbjct 4144 TTGTCCTGGATCTTTGCCTTCACATTTTCGATCGTGTCCGATGGCTCGACCTCAAGTGTG 4203 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | ||||| || ||||||||||| Sbjct 4204 ATGGTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCAT 4241 >seq48 Length=116589 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || ||||| || || ||| | || |||| |||| |||||||||||| || Sbjct 116521 CTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCTTCCAGCTGCTTACCGGCGAA 116462 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| ||||| ||||| | |||| |||||||||||| ||||| || || Sbjct 116461 GATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTCACGTT 116402 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || | ||| ||||||| ||| || || || || |||| || || || Sbjct 116401 CTCGATCGTGTCCGATGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCAC 116342 Query 48755 AAAAATCTGCAT 48766 || |||||||| Sbjct 116341 GAAGATCTGCAT 116330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380862565054326