Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq5733 141 2e-28 seq161 98.7 2e-15 >seq5733 Length=11217 Score = 141 bits (156), Expect = 2e-28 Identities = 280/414 (68%), Gaps = 3/414 (1%) Strand=Plus/Plus Query 47953 CAGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTAT 48012 ||||| |||| || ||| |||| ||||| | ||||| || | ||||| || | Sbjct 2176 CAGCAAACGATCGGCCACGAACTCAATGTACTGCGACATCAGATCGCAATTCATACCGAG 2235 Query 48013 GAGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCAC 48072 | | || |||| || || || | ||| || | ||| ||| || || || | | Sbjct 2236 CATGTCGACCGGCAGGGCTTTCGTCAAAAATTCTTGCTCGATCACAACCGCATCACGAAT 2295 Query 48073 AATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCA 48132 || | | | ||||| || |||||||| | ||||| |||| | | || ||| Sbjct 2296 GATGTCCGTCACGCGCTCCTTCGAGGGTTTCTGTACCAGGTACTTGA---ACATCAGGCA 2352 Query 48133 GGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACC 48192 ||||||||| | ||||| |||||||| || || ||| |||| ||||| || || Sbjct 2353 GGCAAAGTCGCAGTGCAGTCCTTCGTCGCGCGAAATCAGCTCGTTCGAGAACGTCAGTCC 2412 Query 48193 AGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGAT 48252 ||||| | || | || |||||||||||||| || || || || ||||||||| Sbjct 2413 CGGCATCAGGCCACGCTTCTTGAGCCAGAAAATGGCGGCAAAGCTACCGCTGAAGAAGAT 2472 Query 48253 GCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGAT 48312 ||| || || ||||| ||||| || | || || || || |||||| ||||| Sbjct 2473 GCCTTCGACGGCCGCAAACGCCACGACACGTTCGCCAAAGTTGGCCTTCTTGCTCGAGAT 2532 Query 48313 CCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 |||| || |||||||||||||||||||| | ||| |||| ||| || ||||| Sbjct 2533 CCAGTTCAGTGCCCAGTCTGCCTTCTTCTTTACGCACGGCAACGTTTCAATGGC 2586 Score = 84.2 bits (92), Expect = 4e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 ||||||||| ||||||||| || || || || || || ||||| ||| | || || Sbjct 2731 GTACATCTCGCTGTGCACATTTTCCATCGCTATTTGAAAGCCGTAAAAGCAGCGTGCTTC 2790 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGA 48543 ||||| || || ||| | |||| ||| ||||| || || || ||||| || Sbjct 2791 CGTTACCTGTACCTCCTGACTGAAGCGTTCCACCAGGTTCTCGTTAACGATACCATCGGA 2850 Query 48544 AGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT 48603 || |||||||||||||| || || | |||||| || ||| | | | || | | Sbjct 2851 TGCGGCAAAGAAGGCAAGCACGTGCGAGATGAAATGACGTTCGCTCGGTTTCAGCGATTC 2910 Query 48604 CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 |||| | | | ||| || || || || |||||||| ||||||||||| || Sbjct 2911 CCAGTCTTTCATGTCCTTCGATAGATCGACCTCTTCCACGGTCCAGAAGGAAGC 2964 >seq161 Length=83926 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 241487 GACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGG 241546 |||||||| |||| || |||||| ||| || |||||||||||| || ||| |||| Sbjct 41302 GACTTGAGTTCCTTTACGCGCTCCTCGAGCTTCGAGATGCGTTCCAGCTTCCGCTTGCGG 41361 Query 241547 CATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGG 241606 || |||| ||| |||| ||||| || | | || |||||| |||||| |||||||| Sbjct 41362 CACTTGGAGGCGGCCACCCGGTTTCGCAACCGTTTCCGTTCCAGCTTGATCCGTTCCTGC 41421 Query 241607 TCCTCCATGTCGATCGG 241623 |||||| |||||||| Sbjct 41422 GACTCCATATCGATCGG 41438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931344607086080