Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2 152 1e-31 seq5733 114 2e-20 >seq2 Length=295332 Score = 152 bits (168), Expect = 1e-31 Identities = 556/854 (65%), Gaps = 36/854 (4%) Strand=Plus/Minus Query 221357 ACCGGACTCCCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGC 221416 |||||||| || || |||| |||||| ||||||| | ||||||| ||||| | || Sbjct 211504 ACCGGACTTCCTTCATACGTCTCGTACGGACCGTCCCGTTCGGCTAACTCGCAACTC-GC 211446 Query 221417 GTC-AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCT-CTT---GGCCT 221471 || || ||| | | ||| ||||| ||||| || ||||||| || ||| ||||| Sbjct 211445 TTCCAGCGCACCATAGTAAATGGTTTCAAATAT----TTGTTGATTCAGCTTTTGGGCCT 211390 Query 221472 CGGGAGAAGTGAAGGGCATA-CGCAGCATC-TGAAAGACGTCGGCCAGTCCCTGTACTCC 221529 | | | || ||| |||| | |||| | | ||||||| || || || || Sbjct 211389 CTTCGCTTTCGTACGG-ATAGCGCATTAAAATGAATG-CATCGGCCATACCTTGCACACC 211332 Query 221530 GATACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGC-CGCTTCTGGCACGGGATAAAAGT 221588 ||| || ||||||||||| | | |||| || ||| ||| || || || ||||| ||| Sbjct 211331 GATTCCAATGGGCCTGTGGCGCATGTTAGA-GCGCTTCGCCTCCGGTACTGGATAGTAGT 211273 Query 221589 TGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCT 221648 ||| ||||| | ||||| || || | || | | ||| | || || | ||||| Sbjct 211272 TGATATCGATTATTTTGTTCAGATTGCGCGTCACAATCTTAGCGACTTCCTTAAGCTTT- 211214 Query 221649 GGTGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAA 221708 || || ||| ||| || | || || || ||||||||| | Sbjct 211213 -----------ACAAAATCGTAA--GTCTTGTCTGTCTTT-ACGAACATGTTTAGGGCGA 211168 Query 221709 CGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTAC 221768 ||||| |||||||| || | ||||| || | |||| || |||||||| | Sbjct 211167 TCGAAGCCAGATTACACACTGCAATTTCGTCTTTCGATGAGTACTCTACAATCTCTGTGC 211108 Query 221769 AGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGT 221828 | | ||| |||||| ||||| || | | | ||||| || |||||| || | Sbjct 211107 ACAAGTTAGAGCACTTTATGGTGCCAACATTCTGTTGATTGCTTTTACGATTGCATGCAT 211048 Query 221829 CCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGA 221888 ||||||| |||||| | || |||| || |||| ||| | | | || | ||| | Sbjct 211047 CCTTGTACAGCATATACGGTACGCCCGTTTCCACCTGCGATTCAATGATTGCATACCACA 210988 Query 221889 GTTCTCTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAG 221947 || ||| || || || | ||| | ||||| ||| || || | || || Sbjct 210987 AATC-CTGTGCCCTTACTTGTCGAATGAATCGTCCCTC---CTTCTCGTAACGCGTGTAC 210932 Query 221948 AGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATC 222007 || | || |||| |||||| | | || ||| || ||||| | || |||||| Sbjct 210931 AGTGTCTCGAACTCTTCACCCCAAGTTTCCGCCAACCCAGGACAATCGTGAGGGCACATC 210872 Query 222008 AGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCC 222067 |||||||| | ||| | | |||| | ||| || || ||||| ||||||| || Sbjct 210871 AGACTCCACATTTCGTTAGCCTCTACCCGTTTCATAAACAGATCCGGTATCCACAAAGCG 210812 Query 222068 TGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAAC 222127 | || | || | | ||| ||||||| |||| |||||||| ||||||||| |||| Sbjct 210811 TAGAACATGTCACGTGCACGCACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAGAAAC 210752 Query 222128 TCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTG 222187 || || | ||| | ||||| || || || || | ||| | ||| || ||||| |||||| Sbjct 210751 TCGAATACATCACCATGCCATGGTTCGAGGTATATGGCAAAAGCTCCCGGTCGTTTGTTG 210692 Query 222188 CCACCCTGATCCAC 222201 |||||||||||||| Sbjct 210691 CCACCCTGATCCAC 210678 >seq5733 Length=11217 Score = 114 bits (126), Expect = 2e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 25819 AAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAG 25878 |||| |||||| ||||| |||| |||||| ||| ||| || | |||||||| Sbjct 2562 AAGAAGAAGGCAGACTGGGCACTGAACTGGATCTCGAGCAAGAAGGCCAACTTTGGCGAA 2503 Query 25879 CGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATC 25938 || | || || ||||| || || || |||||||| ||||||||| ||||| ||||| Sbjct 2502 CGTGTCGTGGCGTTTGCGGCCGTCGAAGGCATCTTCTTCAGCGGTAGCTTTGCCGCCATT 2443 Query 25939 TTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGC 25998 |||||||||||| || || ||||| || ||| || || |||||||| || Sbjct 2442 TTCTGGCTCAAGAAGCGTGGCCTGATGCCGGGACTGACGTTCTCGAACGAGCTGATTTCG 2383 Query 25999 AGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTG 26034 | ||||| || || ||| | || |||||||||||| Sbjct 2382 CGCGACGAAGGACTGCACTGCGACTTTGCCTGCCTG 2347 Score = 84.2 bits (92), Expect = 4e-11 Identities = 156/227 (69%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTA--CGCTCTATCC 25569 |||||||| |||||| | ||||| | ||||||||| | | |||| | |||| | || Sbjct 2956 CTGGACCGTGGAAGAGGTCGATCTATCGAAGGACATGAAAGACTGGGAATCGCTGAAACC 2897 Query 25570 AAAGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATA 25629 | ||| | ||||| || | ||||| | || |||||||| || || |||||||| Sbjct 2896 GAG--CGAACGTCATTTCATCTCGCACGTGCTTGCCTTCTTTGCCGCATCCGATGGTATC 2839 Query 25630 GTGAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGT 25689 || |||||||| ||| || | |||| ||| || ||| ||| || || Sbjct 2838 GTTAACGAGAACCTGGTGGAACGCTTCAGTCAGGAGGTACAGGTAACGGAAGCACGCTGC 2779 Query 25690 TTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTA 25736 || ||||| || || || || || |||||||||||| ||| |||| Sbjct 2778 TTTTACGGCTTTCAAATAGCGATGGAAAATGTGCACAGCGAGATGTA 2732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928657150129280