Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1095 199 3e-45 seq6608 87.8 1e-11 >seq1095 Length=35156 Score = 199 bits (220), Expect = 3e-45 Identities = 379/553 (69%), Gaps = 10/553 (2%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||| ||||||||||| | || || || ||||| ||||| | || | || | || ||| Sbjct 21980 GCAGTTGGTATTGATCTGGGCACGACCTACAGCTGTGTCGGAGTGTTCCAGCACGGCAAA 22039 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 |||||||| |||||||||||||| || || |||| |||||||| |||||| | || ||| Sbjct 22040 GTAGAAATCATTGCCAATGACCAGGGAAACCGAACCACACCATCGTATGTTGCCTTCACT 22099 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || || || | ||| ||||| |||||||| || | || | || || || ||| Sbjct 22100 GACACGGAGCGTCTGATTGGCGATGCTGCCAAGAACCAGGTGGCCATGAACCCGACCAAT 22159 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || || || ||||| || | ||||||| ||||| ||||| ||| || | |||| | Sbjct 22160 ACAATCTTCGATGCCAAGCGTCTGATTGGCCGTAAGTTTGACGATCCCGCCATCCAGGCC 22219 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAG-- 474626 || ||| || ||||| || ||||| | | || |||||| | || | | Sbjct 22220 GACATGAAGCACTGGCCGTTCGAGGTGGAGTCGATCGAGGGCAAACCAAAGATTGCGGTC 22279 Query 474627 CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAG 474686 |||||| | || || | ||| || | |||||| | | ||| ||||| | Sbjct 22280 GAATACAAG--GGCGAGAAGAAATGTTTCTTCCCGGAAGAGGTCAGTTCGATGGTGCTGA 22337 Query 474687 CCAAAATGAAACAAACCGC--GAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAA 474743 |||| ||||| |||| || |||| | | ||| ||||| || || | || || | Sbjct 22338 CCAAGATGAAGGAAACGGCCGAAGCTTA---CCTGGGCAAGACGGTTACAAACGCCGTCA 22394 Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 |||| || ||||| || || |||||||| || || || || || || ||||| |||| | Sbjct 22395 TTACCGTGCCAGCCTACTTCAATGATTCGCAGCGCCAGGCGACGAAGGATGCCGGAACCA 22454 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 || |||| | || || | ||||| || || || || || |||||||| |||| || | Sbjct 22455 TTTCAGGATTGAACGTGCTGCGTATCATCAACGAGCCGACCGCAGCCGCCATTGCCTACG 22514 Query 474864 GTCTTGATAAGAA 474876 |||| || ||||| Sbjct 22515 GTCTGGACAAGAA 22527 >seq6608 Length=7582 Score = 87.8 bits (96), Expect = 1e-11 Identities = 118/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 817100 GATTTTTCATCTCCAAATATTGCAAAGGAAATGCATATTGGACACTTGAGATCTACAATA 817159 || || || || || ||| | || |||||||||||| | || || ||| | || || ||| Sbjct 1135 GACTTCTCGTCGCCCAATGTGGCTAAGGAAATGCATGTCGGGCATTTGCGTTCGACCATA 1194 Query 817160 ATTGGTGAATCTCTTTGTAGAATATATGAATTTTGT-GGATGTGAAGTACAAAGAATAAA 817218 |||||||| || ||||| | | || | ||||| || ||| |||| | || || Sbjct 1195 ATTGGTGATTCGATTTGTCG-TTTCCTGGAGTTTGTGGGCCATGATGTACTTCGTATTAA 1253 Query 817219 TCATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGC 817260 ||||| || || |||||||| || ||||| ||||||||||| Sbjct 1254 CCATATCGGAGACTGGGGAACGCAGTTTGGCATGTTAATTGC 1295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267485933401976