Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2 158 1e-33 seq1735 89.7 6e-13 seq9121 86.0 7e-12 >seq2 Length=295332 Score = 158 bits (174), Expect = 1e-33 Identities = 462/700 (66%), Gaps = 25/700 (4%) Strand=Plus/Plus Query 75894 AATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGA 75953 |||| ||| ||| || || ||| |||||||| ||||||||||| || || || | Sbjct 211006 AATCGCAGGTGGAAACGGGCGTACCGTATATGCTGTACAAGGATGCATGCAATCGTAAAA 211065 Query 75954 GTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGT 76013 | || ||| ||||| | || || || ||| |||| || | ||||| || ||| |||||| Sbjct 211066 GCAATCAACAGAATGTTGGCACCATAAAGTGCTCTAACTTGTGCACAGAGATTGTAGAGT 211125 Query 76014 ACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATG 76073 || || || || || | || || || ||| |||| || |||||||| || ||| Sbjct 211126 ACTCATCGAAAGACGAAATTGCAGTGTGTAATCTGGCTTCGATCGCCCT----AAACATG 211181 Query 76074 TCAATGAAG--AGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGT 76131 | | ||| |||| | |||| |||| || ||| ||| | ||| || | |||||||| Sbjct 211182 TTCGTAAAGACAGACAAG-ACTTACGATTTTGTAAAGCTTAAGGAAGTCGCTAAGATTGT 211240 Query 76132 TACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGT---TGAGACTGCGCG 76188 || ||||| ||| | | || || | || | ||||| || ||| | ||| Sbjct 211241 GACGCGCAATCTGAACAAAATAATCGATATCAACTACTATCCAGTACCGGAGGCGAAGCG 211300 Query 76189 AAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATT 76248 ||||| ||||| ||||| || ||||| | ||||| |||||| | || |||| ||| Sbjct 211301 ---CTCTAACATGCGCCACAGGCCCATTGGAATCGGTGTGCAAGGTATGGCCGATGCATT 211357 Query 76249 TATTTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTT 76308 ||||| ||||| | | || || || ||| | || ||||| | || || Sbjct 211358 CATTTTAATGCGCTATCCGTACGAAAGCGAAGAGGCCCAAAAGCTGAATCAACAAATATT 211417 Query 76309 TGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTC 76368 ||||||||| || | | | ||||| |||||||| || || || ||| | ||| | Sbjct 211418 TGAAACCATTTACTATGGTGCGCTGGAAGCGAGTTGCGAGTTAGCCGAACGGGACGGTCC 211477 Query 76369 CTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGA 76428 || ||||| | ||| || ||| | | |||| || | |||| || |||| ||| Sbjct 211478 GTACGAGACGTATGAAGGAAGTCCGGTAAGCAAAGGCGTATTACAGTACGAAATGT-GGA 211536 Query 76429 AGGTGAAACCAAGCTCAACTACG--ACTGGGATGTTCTCAAGGAACGCAT--CAAGGAGA 76484 | | |||| | | | ||| | |||||| | | || ||| || ||| || Sbjct 211537 ACAAGGAACCGA-CGGATCTATGGAACTGGGCCGAGTTAAAAGAAAAGATAGCAA--AGC 211593 Query 76485 AGGGTCTTCGTAA--CAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAAT 76542 | || ||||||| || | ||| |||| || ||||| || || || || || ||||| Sbjct 211594 ACGGAATTCGTAATTCATTACTTT--TGGCTCCGATGCCGACCGCTTCAACGGCGCAAAT 211651 Query 76543 CTTGGGTAATAATGAATGCTTTGAACCATACACAACAAAC 76582 ||||| || ||||| | || || || |||||| | ||| Sbjct 211652 ATTGGGCAACAATGAGTCTTTCGAGCCGTACACATCGAAC 211691 >seq1735 Length=22919 Score = 89.7 bits (98), Expect = 6e-13 Identities = 153/218 (70%), Gaps = 12/218 (6%) Strand=Plus/Minus Query 14419 CAAGGATGAAATGAAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACCA 14478 |||| ||| |||||||||| || || || | || || ||||| || ||||| ||||| Sbjct 7459 CAAGCGTGAGGTGAAGGTGGCCCAGCTTGCTGGATCGGTTGCGGAGAAATCTGCCTACCA 7400 Query 14479 CCATGGTGA--AGTATC-CTTAGCGGACACGATTGTTAAGTTGGCAAACGACTACACGGG 14535 |||||||| ||| | || || ||||| || || ||||| | ||||| || Sbjct 7399 TCATGGTGAGCAGTCGCTCTGTTCG---ACGATCGTCAATTTGGCGCAGAACTACGTCGG 7343 Query 14536 TTCAAACAACATTAACCTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGG 14595 |||||||| || || || | ||| ||||||| || ||||||||| | | ||| || Sbjct 7342 AAGCAACAACATCAATCTGCTCTATCCGGGTGGTCAGTTCGGTACGCGTTTGACGGGCGG 7283 Query 14596 TAAGGAT---GCTTCTCAGACGAGGTACATTTTCACAA 14630 ||||| ||| || | |||||||||||||||| Sbjct 7282 AAAGGACAGCGCTAGTC---CTAGGTACATTTTCACAA 7248 >seq9121 Length=5000 Score = 86.0 bits (94), Expect = 7e-12 Identities = 270/413 (65%), Gaps = 8/413 (2%) Strand=Plus/Plus Query 177557 TTTCAACAAACTGCCTCACAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAGCCT 177616 |||| ||||||| || ||| ||||| || || ||||| || | ||| | || || | || Sbjct 3761 TTTCTACAAACTCCCGCACCGAGTGCGTTTCGCCCGTGGCAATTACAAAATCTTCCGGCT 3820 Query 177617 CTTCTTGTTGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCTC 177676 || || || | |||||||||||| ||||| || || || ||||| || |||||||| | Sbjct 3821 TGTCCTGCTGCATCATGAGCCACATCGCTTCGACGTAATCTTTGGCGTGGCCCCAGTCAC 3880 Query 177677 TGGCAGCGTTGAGGTTACCGAGTTCAAGGAACTCTCTCTCACCTTTCACAATTTGTTTGA 177736 | | || || || || || ||| | ||| || || | || | || | Sbjct 3881 GTTTCGAATCCAGATTGCCCAGCTCCAGGTATTCTTGCTGTCC--GAGCGATATCTTCGC 3938 Query 177737 CGCC-ATC-AGTAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTT 177794 | || | | || || || ||||||||| | | || || | ||| || ||||| || Sbjct 3939 CACCGAGCGGGTTATTTTGCGTGTGACAAAATTTTCCCCCCGGCGCGGCGACTCGTGATT 3998 Query 177795 GAAGAGGATTCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGACGAGCCA 177854 || || || || ||| || ||||| | || | ||| || || ||| | || | ||| Sbjct 3999 AAACAGAATCCCATTGCAAGCGAACATATCGTACGCTTCGCGATAGTTTATCACAATCCA 4058 Query 177855 GTGAGCGGCCAATTTGGAGACGCCATAGACGGATCGTGGGTAGAAGGGTGTCTCCTCAGT 177914 || || || || | | | || || ||||| ||||| || |||| ||| Sbjct 4059 GTATCCGTACATCTTCGCACAGGCGTACGGCGACCGTGGATAGAATGGAGTCTTCTC--G 4116 Query 177915 TTGTGGAGTTTCTCGG--ACTTTACCAAACATCTCCGAAGTTGAGGCTTGGTA 177965 || || || |||||| || || || ||| ||| || || || |||||||| Sbjct 4117 TTCTGCGGTGTCTCGGCCACCTTTCCGTACAGCTCGGACGTGGATGCTTGGTA 4169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596449078026560