Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq478 122 3e-22 seq2 107 6e-18 >seq478 Length=53163 Score = 122 bits (134), Expect = 3e-22 Identities = 185/261 (71%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| |||||| ||||||||||| || ||||| ||| | ||||| ||||| ||| Sbjct 22867 TCCATAGCCTTGATCAAACGACGCTGGATGTAACCGGTTTCGGCCGTTTTGACAGCAGTA 22926 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCC 302693 || || ||||| ||||||| |||||||| |||||| | | || ||| ||| | || Sbjct 22927 TCGATCAGACCTTCACGACCGCCCATAGCGTGGAAGTAGAATTCGGTCGG-CGTCAAACC 22985 Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAA 302753 ||| | || | || ||||| || |||| || || || ||| ||| |||| Sbjct 22986 GGCAAGGTACGAATTTTCCACGAAGCCTCGCGATTCAGGACCATAATCGTCTTTGATAAA 23045 Query 302754 GTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTG 302813 ||||||||| || | ||| | ||| | || |||||||| || || ||||||||||| Sbjct 23046 GTGTGGCAGTGTGCGTTTCCGGAATCCGAACGGAATACGCTTACCTTCTACGTTCTGCTG 23105 Query 302814 TCCCAGGCACGAAATCATCTG 302834 ||| | || | ||| | ||| Sbjct 23106 TCCGACACAAGCAATAACCTG 23126 >seq2 Length=295332 Score = 107 bits (118), Expect = 6e-18 Identities = 461/721 (64%), Gaps = 7/721 (1%) Strand=Plus/Minus Query 155568 TTTACAAACATACCAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCT-TGTCGTC 155626 ||||| ||||| || | || || ||||||||||| || ||| | || | | ||| Sbjct 211189 TTTACGAACATGTTTAGGGCGATCGAAGCCAGATTACACACTGCAATTTCGTCTTTCGAT 211130 Query 155627 GCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTG 155686 | ||| ||||||||||| ||||| |||||| | ||| |||||||| | ||||| || Sbjct 211129 GA-GTACTCTACAATCTCTGTGCACAAGTTAGAGCACTTTATGGTGCCAACATTCTGTTG 211071 Query 155687 GTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTG 155746 || ||||| || || ||||||||||| || || || || || || |||| ||| Sbjct 211070 ATTGCTTTTACGATTGCATGCATCCTTGTACAGCATATACGGTACGCCCGTTTCCACCTG 211011 Query 155747 TGCGTCCA-GAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTT 155805 | || | || | || ||| | || | || | | ||| || ||| || | Sbjct 211010 CGATTCAATGATTGCATA-CCACAAATCCTGTGCCCTTACTTGTCGAATGAATCGTCCCT 210952 Query 155806 CCGACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAG 155865 || ||| || | | ||||| || | | || ||||| || || || |||| Sbjct 210951 CCTTCTCGTAACGCGTGTACAGTGTCTCGAACTCTTCACCCCAAGTTTCCGCCAACCCAG 210892 Query 155866 GGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATA 155925 | || | | ||||| | ||| ||| |||| ||| | ||| || | |||||| | Sbjct 210891 GACAATCGTGAGGGCACATCAGACTCCACATTTCGTTAGCCTCTACCCGTTTCATAAACA 210832 Query 155926 CATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGAT 155985 ||| ||| | ||| ||||| | ||| | ||| |||||| | |||| | Sbjct 210831 GATCCGGTATCCACAAAGCGTAGAACATGTCACGTGCACGCACCTCCTCCTTGCCGGTGT 210772 Query 155986 TCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAA 156045 | ||| || || | || || | |||| ||| ||| || || || || |||| Sbjct 210771 TTTTCTTCAGATCCAGAAACTCGAATACATCACCATGCCATGGTTCGAGGTATATGGCAA 210712 Query 156046 AA-CTACCATTC--CTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACAC 156102 || || || || | |||||||||||||| ||||| || || || || ||| | || | Sbjct 210711 AAGCTCCCGGTCGTTTGTTGCCACCCTGATCCACATATCGGGCTGTGTTGTTGTACACTC 210652 Query 156103 CTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATG 156162 ||||| || | | || || ||| | || || || || || | || || | Sbjct 210651 GCAGCATCGGTACCAACCCGTTCGAAATCCCGTTCGTGCCTGAGATGTACGTTCCCTTCG 210592 Query 156163 AGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATT 156222 ||||| | |||| || || ||||| || |||| |||| ||||| | || || | Sbjct 210591 CGCGAATACAGTGAACATTCAGCCCAATTCCGCCTGCTGATTTTGAAATCAGCGCACACT 210532 Query 156223 CCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACG 156282 ||||| |||| | |||||||||||| ||| || ||| | ||| ||| | || | Sbjct 210531 GCTTTAGCGTATCATAGATACCTTCAATACTATCGTCAGACATGGTTAGCAGAAAACAAG 210472 Query 156283 A 156283 | Sbjct 210471 A 210471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471512822450594