Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq5733 114 2e-19 seq699 100 3e-15 >seq5733 Length=11217 Score = 114 bits (126), Expect = 2e-19 Identities = 158/221 (71%), Gaps = 9/221 (4%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 ||||||||||| |||| ||||| || | || || ||||| ||||| |||||| Sbjct 2372 CCTTCGTCGCGCGAAATCAGCTCGTTCGAGAACGTCAGTCCCGGCATCAGGCCACGCTTC 2431 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| || |||||| || || || ||| |||||||| |||||||| ||||| Sbjct 2432 TTGAGCCAGAAAATGGCGGCAAAGCTACCGCTGAAGAAGATGCCTTCGACGGCCGCAAAC 2491 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTT---GATCCACTTCATCGCC 869356 | | || || ||| ||||| | | ||| |||| | |||||| |||| ||| Sbjct 2492 GCCACGACACGTTCGCCAAAGTT------GGCCTTCTTGCTCGAGATCCAGTTCAGTGCC 2545 Query 869357 CAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGC 869397 ||||| ||||| ||| | || |||||| ||| || ||||| Sbjct 2546 CAGTCTGCCTTCTTCTTTACGCACGGCAACGTTTCAATGGC 2586 >seq699 Length=39807 Score = 100 bits (110), Expect = 3e-15 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 1592108 AAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACC 1592167 ||||||||||| |||||| ||||||| || || | || || ||| ||| Sbjct 32973 AAGCGCACCGATGACATCAGTTCGTGGGATGCCGATTTCCTGAAGGTGGACCAGGGTACC 33032 Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 | ||||| || || || || || |||||| | ||||| ||| | | || ||| | | Sbjct 33033 TTGTTTGAATTAATACTGGCAGCTAACTACTTGGACATTAAGGGTTTACTGGATGTGACG 33092 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 |||||| | ||||| ||||||||||||||||| | || || ||||| || ||||| || Sbjct 33093 TGCAAGACGGTGGCAAACATGATCAAGGGCAAAACCCCGGAAGAGATTCGAAAGACGTTC 33152 Query 1592288 AACATCAAGTACG 1592300 ||||| ||| ||| Sbjct 33153 AACATTAAGAACG 33165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105812870593354