Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2 365 4e-96 seq3723 129 5e-25 seq1402 129 5e-25 seq48 120 3e-22 >seq2 Length=295332 Score = 365 bits (404), Expect = 4e-96 Identities = 1221/1874 (65%), Gaps = 51/1874 (3%) Strand=Plus/Minus Query 138139 TTTAGCAGTGAAGATTTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTC 138198 ||| ||||| | ||| || || ||||| | || |||| | |||| || || || | | Sbjct 212098 TTTTGCAGTTTCGTTTTGTCCACCGTAAATTGGATCGCATTAACGGCCGGCTTGGTGCGC 212039 Query 138199 AGATAATACATTCCCGTTTTTAA-CCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAG 138257 | ||||||||| ||||| || || ||||| |||| || |||| | || ||||| ||||| Sbjct 212038 AAATAATACATGCCCGTCTTCAATCCCATCTTCC-AGCCGTAGAAATGGATCGACGTGAG 211980 Query 138258 TAACGCGTAAGTCGGTTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGC 138317 | || |||| | || | |||||| |||||||| ||||| ||||| || Sbjct 211979 CTTGCCATAGTTCGGCTCGGCTACGTGTATGTTGAACGATTGTGATTGATCAATGAATGC 211920 Query 138318 GCCTCGATCAATGGCCATGTTAATTAAA-TTTTTACTTTTCATCTCCCACACGGTCTTGT 138376 |||||||| ||||| ||||| | ||||||| || |||||||| || |||| Sbjct 211919 ACCTCGATCGGCAGCCATTTTAATGCATGTTTTTACCGAG-ATTTCCCACACTGTTTTGT 211861 Query 138377 ATAGATCACGAATATGTCGCGGTATTGTTGCAATATTTTGAATGCTCCCGTTGGCCGCAA 138436 | || ||||| || | | || |||||| | || |||| ||| || || | | Sbjct 211860 ACAGGTCACGGATCTCTTTTGGAATTGTTTCTATGCTTTGGATGGATCCATTATTGGACA 211801 Query 138437 TGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACTTGATCAAGTCGTTTATCAGAT 138496 |||| || |||| || | |||| || | ||| || | | |||| Sbjct 211800 AGATGTTGTTCTTCATATCGAGATCCCACAGCCCCATCGCAGTCAGATCTTGCAGGAGAT 211741 Query 138497 ATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGA 138556 ||| | ||||| || || || | ||| || || ||| |||| ||| ||| Sbjct 211740 GATGGTTCACCACCTGGAACTCGCCCGACAACACACGTCGATTATAAACGTTCGATGTGT 211681 Query 138557 AAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACG 138616 | ||||| || || || ||||| |||| || || ||||| | ||||||||||| || Sbjct 211680 ACGGCTCGAAAGACTCATTGTTGCCCAATATTTGCGCCGTTGAAGCGGTCGGCAT---CG 211624 Query 138617 CCACCAAAAGA---GAATTCCGTAAACCGTGAAGCTTGAT-TCGTTCCTTG-AGCGACGA 138671 ||||||| ||||| || | ||||| ||| | || || ||| | | | Sbjct 211623 GAGCCAAAAGTAATGAATTACGAATTCCGTGCT--TTGCTATCTTTTCTTTTAACTCGGC 211566 Query 138672 CCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACT 138731 ||||| ||| | ||| | |||| ||||||||||| ||||||||||| | || || Sbjct 211565 CCAGTTCCATAGATCCGTCGGTTCCTTGTTCCACATTTCGTACTGTAATACGCCTTTGCT 211506 Query 138732 TGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGC 138791 | | ||||| ||||| |||| ||||| ||| | || || |||||| ||||| Sbjct 211505 TACCGGACTTCCTTCATACGTCTCGTACGGACCGTCCCGTTCGGCTAACTCGCAACTCGC 211446 Query 138792 CTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGC 138851 || ||||||||||||||||| ||||| || || ||||| ||| | ||||||| | Sbjct 211445 TTCCAGCGCACCATAGTAAATGGTTTCAAATATTTGTTGATTCAGCTTTTGGGCCTCTTC 211386 Query 138852 GCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCC 138911 ||| |||||||| ||| | | |||| || ||||||| |||||||| || | ||| Sbjct 211385 GCTTTCGTACGGATAGCGCATTAAAATGAATGCATCGGCCATACCTTGCACACCGATTCC 211326 Query 138912 GACAGGGCGATGGCGCAGATTTGA-CGCTTTTGCGGCTTCGATA--GGATAATAGTTTAC 138968 | || | ||||||| || || ||||| || || || || ||||| ||||| | Sbjct 211325 AATGGGCCTGTGGCGCATGTTAGAGCGCTT---CGCCTCCGGTACTGGATAGTAGTTGAT 211269 Query 138969 ATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGTT-CAA 139027 |||||| |||||||| | ||| ||| || | ||||| || | | |||| | || ||| Sbjct 211268 ATCGATTATTTTGTTCAGATTGCGCGTCACAATCTTAG-CGACTTCCTTAAGCTTTACAA 211210 Query 139028 AATCGTATGTGCCCCCGTTGTC-GTCGACGACGTCGACAAATTTGTTGACACAAATCGAG 139086 ||||||| || ||||| ||| | || || |||| | ||||| Sbjct 211209 AATCGTAAGT------CTTGTCTGTC-------TTTACGAACATGTTTAGGGCGATCGAA 211163 Query 139087 GCTATGTTGCACACCGCCACTTCGTCGGGGTCGCT--GTATTCGACAATTTCGGCACACA 139144 || | || ||||| || | |||||| ||| | ||| || ||||| || | |||| Sbjct 211162 GCCAGATTACACACTGCAATTTCGTC--TTTCGATGAGTACTCTACAATCTCTGTGCACA 211105 Query 139145 AATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTT 139204 | ||| ||||| || || || | ||| |||||||||||||| || || || ||||| | Sbjct 211104 AGTTAGAGCACTTTATGGTGCCAACATTCTGTTGATTGCTTTTACGATTGCATGCATCCT 211045 Query 139205 TGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGT 139264 |||| |||||||||||| ||| |||||||| || | || || || | |||| | Sbjct 211044 TGTACAGCATATACGGTACGCCCGTTTCCACCTGCGATTCAATGATTGCATACCACAAAT 210985 Query 139265 CCCTAGCTTGTATTTGACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGT 139324 || || || ||| || | | | || | || |||||| ||| ||| | Sbjct 210984 CCTGTGCCCTTACTTGTCGAATGAATCGTCCCTCCTTCTCGTAACGCGTGTACAGTGTCT 210925 Query 139325 CGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACC 139384 |||| |||||| | | || | | | |||| | || ||| ||||| || || Sbjct 210924 CGAACTCTTCACCCCAAGTTTCCGCCAACCCAGGACAATCGTGAGGGCACATCAGACTCC 210865 Query 139385 ATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCA 139444 | | |||| |||| || || |||| ||||||||||| |||||||||||| | | || Sbjct 210864 ACATTTCGTTAGCCTCTACCCGTTTCATAAACAGATCCGGTATCCACAAAGCGTAGAACA 210805 Query 139445 AATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAA 139504 || || || | || ||| || |||| |||| | || || || || | Sbjct 210804 TGTCACGTGCACGCACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCGAATA 210745 Query 139505 CGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGT---TTGCCACCTT 139561 | ||| | ||||||||||| || || ||||| | || || ||| |||||||| | Sbjct 210744 CATCACCATGCCATGGTTCGAGGTATATGGCAAAAGCTCCCGGTCGTTTGTTGCCACCCT 210685 Query 139562 GATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTG 139621 |||| || | ||| | | || ||| | || |||| |||||| ||| ||| ||| Sbjct 210684 GATCCACATATCGGGCTGTGTTGTTGTACACTCGCAGCATCGGTACCAACCCGTTCGAAA 210625 Query 139622 TTCCGTTGGTGCTACGGATGGGACTGTTGCGAGCTCG-GACGTCA-TGTACATTGATGCC 139679 | ||||| |||| ||| | || ||| | | || || || || ||||| | || Sbjct 210624 TCCCGTTCGTGCCTGAGAT-GTAC-GTTCCCTTCGCGCGAATACAGTGAACATTCAGCCC 210567 Query 139680 GATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAATGTCTCGTATATACCTCT 139739 |||||||| | |||| || || | | || | || || || || |||||| Sbjct 210566 AATTCCGCCTGCTGATTTTGAAATCAGCGCACACTGCTTTAGCGTATCATAGATACCTTC 210507 Query 139740 TATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCC 139799 || || ||||| ||| || | |||||| || || || || || || ||| ||| | Sbjct 210506 AATACTATCGTCAGACATGGTTAGCAGAAAACAAGATGACAGCTGTGGACGTTGCGTAGC 210447 Query 139800 GGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGT 139859 || ||||||| || || || || || || | | ||| | ||| | ||| || Sbjct 210446 TGCCGCAAACATGGTCGGTGAGGCATGGGTAAAATAACGCTCCGAAAGCAAGTTGTATGT 210387 Query 139860 TTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATG 139919 |||||||| | || || || || ||||||| | || ||||||| ||| || Sbjct 210386 CTCGATGGCTGCATCGATGTCTTCACCATGTATACCGATCGCAACGCGCATCAACATGTG 210327 Query 139920 TTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATA--ACCGTTCTCTAGGGTC 139977 || ||||| | | | |||| ||| || || ||| ||||| || | || Sbjct 210326 CTGCGGACGTTCAACAATCTTACCCTTGATCTTCAACAAATAGGACCGT--TCCAATGTT 210269 Query 139978 TTGTAGCCAAAGTA 139991 ||| | |||||||| Sbjct 210268 TTGAACCCAAAGTA 210255 >seq3723 Length=15797 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | |||||||| ||||| || || || || || || || || |||| | Sbjct 4241 ATGCAGATTTTCGTGAAAACGCTCACCGGCAAGACCATCACACTTGAGGTCGA-GCCATC 4183 Query 24764 G-ACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 | |||| | |||| || || ||||||||| ||||| || ||||| || || ||||| Sbjct 4182 GGACACGATCGAAAATGTGAAGGCAAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCA 4123 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| | ||||| ||||| || |||||||||||| | | | || || || || Sbjct 4122 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACACTATCGGACTACAA 4063 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||| |||||||| || || || ||||| ||||| | || || || Sbjct 4062 CATTCAGAAGGAATCTACCCTCCATCTGGTGCTGCGACTCCGTGGTGG 4015 >seq1402 Length=30251 Score = 129 bits (142), Expect = 5e-25 Identities = 170/232 (73%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | ||||| || || ||||| || ||||| || || || || || | Sbjct 9040 GATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCCTC 9099 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || | || || |||||||| || || || || || || || ||||| Sbjct 9100 GGATACGATCGAGAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCGCCGGATCA 9159 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA--TTCGAGAAACATGTCAGATTAT 24880 || ||| ||||||||||||| || ||||||||||| ||| | || |||| || || Sbjct 9160 GCAGCGTCTGATCTTTGCCGGTAAGCAGCTGGAGGACGGTCG-CACAC-TGTCCGACTAC 9217 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 |||||||| ||||| || || || ||| ||||| | || ||||||| |||| Sbjct 9218 AACATTCAGAAGGAGTCCACCCTTCACCTGGTGCTTCGCCTGCGCGGTGGCG 9269 >seq48 Length=116589 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA-C 24762 ||||||||||| | || ||||| || || || || || ||||| || || | ||||| | Sbjct 116330 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCG-AGCCATC 116388 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| || || || ||||| ||||| Sbjct 116389 GGACACGATCGAGAACGTGAAGGCTAAGATCCAGGACAAGGAGGGCATTCCTCCAGATCA 116448 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||||||||||| ||||| || |||||||| || | | |||| || || || Sbjct 116449 GCAGCGTTTGATCTTCGCCGGTAAGCAGCTGGAAGACGGACGTACTCTGTCCGACTACAA 116508 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| ||||| | |||||||| | || |||| ||||| Sbjct 116509 CATCCAGAAGGAGTCGACCTTGCACTTGGTCCTCCGTCTGCGTGGAGG 116556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449806709437360