Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq4289 132 4e-26 seq1402 82.4 6e-11 >seq4289 Length=11692 Score = 132 bits (146), Expect = 4e-26 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 34438 TCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGA 34497 |||| || ||||| ||||| || ||||| || |||||||| || || || | || ||| Sbjct 2223 TCGAATTGAGTTTGTGCGCCAAGTTCGCAACCAAAGTACTTCGTTGGATAGGTTGCAGGA 2164 Query 34498 CGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCC 34557 || |||| ||| | || | |||| |||||| ||||| || || ||||||||||| || Sbjct 2163 CGACCAATCGCTCTAGCCACCTCGGCCATGTTCACGATTACCGTTTTGATGCCGTTTCCT 2104 Query 34558 TTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACA 34617 || || || ||||| || |||||| ||||| ||||| |||||||| || | |||| Sbjct 2103 TTACCCTCTACCTTAGCATTGATGCGAGGCATCTTGTAACGGTAGAAGATATCGGTCACA 2044 Query 34618 TTGCGGTTAACGTTCACAGTCCCCAT 34643 || || || ||||| || || |||| Sbjct 2043 TTACGATTCACGTTTACGGTAGCCAT 2018 Score = 102 bits (112), Expect = 7e-17 Identities = 164/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 34203 CGGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGATA 34262 ||| ||||| || | ||||| ||||| | ||| || | | |||| || ||| | Sbjct 2541 CGGTGGGTTCTTGATAATGAACGTGTTCACCTTGTGGTTTACCTCAAGCGGACCATGAAA 2482 Query 34263 ACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCAGT 34322 |||||| |||||||| ||||| | || | ||| || | || || | | || || Sbjct 2481 ACCGCACGCTTTGCATCCCTGCGAAATGGTACCCTTCTTCGATGATACCAGCAAATCCGT 2422 Query 34323 CTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGGTC 34382 ||| || || || |||||||| || | |||||||||||||| || ||||| |||| || Sbjct 2421 CTCAGGATTATCGCATTCCGGGCATAGTACAAACTTGCGGATAAATCCATCGAGCAAATC 2362 Query 34383 CTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAAT 34438 ||| | || | | ||||| ||||| || || ||||| ||||| || | | ||| Sbjct 2361 CTGCAGTTTGGCAGCATCGTGCGAGCCATTCACAATGAAGCGTTCATTCTAGAAAT 2306 >seq1402 Length=30251 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 110267 TTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAG 110326 || || ||||| || || |||||||| | || || || ||||||||| | || ||| Sbjct 9035 TTCAAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAG 9094 Query 110327 CCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTG 110386 || ||||| ||| | || || |||||| || || || ||| | || | Sbjct 9095 CCCTCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCGCCG 9154 Query 110387 GATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGAT 110446 ||||| || | || || | ||| ||||| ||||||||||| | | ||| || | || Sbjct 9155 GATCAGCAGCGTCTGATCTTTGCCGGTAAGCAGCTGGAGGACGGTCGCACACTGTCCGAC 9214 Query 110447 TACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAggggg 110499 ||||||||||| || || || || | ||| ||||| | | ||||| || || Sbjct 9215 TACAACATTCAGAAGGAGTCCACCCTTCACCTGGTGCTTCGCCTGCGCGGTGG 9267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412760280783866