Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq4839 123 4e-22 seq2911 123 4e-22 seq5733 102 1e-15 seq699 91.5 2e-12 >seq4839 Length=15722 Score = 123 bits (136), Expect = 4e-22 Identities = 173/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || |||||||||||||| || ||||||||| | ||||| || || ||| Sbjct 15386 TGTACTTTGTCACAGCCTTGGTACCCTCGGATACGGCGTGCTTTGCCAGCTCACCCGGCA 15327 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || || ||||||||||| |||| |||||| ||||||||| Sbjct 15326 GCAGTAGTCGGACCGCCGTCTGGATCTCCCGGGACGTGATCGTCGAGCGCTTGTTGTAAT 15267 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| ||| || || | | || || |||| || ||||||||||| ||||| Sbjct 15266 GGGCCAACCGGGACGCTTCCGCCGCAATCCGCTCGAAGATATCGTTGACAAAGCTGTTCA 15207 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 | || ||| | || |||||||| |||||| || |||||||| ||||| |||| Sbjct 15206 TAATGCTCATGGCCTTCGACGAGATGCCGGTGTCGGGATGGACCTGCTTCAGCACTTTGT 15147 Query 1485710 AAA 1485712 ||| Sbjct 15146 AAA 15144 >seq2911 Length=16084 Score = 123 bits (136), Expect = 4e-22 Identities = 173/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || |||||||||||||| || ||||||||| | ||||| || || ||| Sbjct 1589 TGTACTTCGTCACAGCCTTGGTACCCTCGGATACGGCGTGCTTTGCCAGCTCACCCGGCA 1530 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || || ||||||||||| |||| |||||| ||||||||| Sbjct 1529 GCAGTAGTCGGACCGCCGTCTGGATCTCCCGGGACGTGATCGTCGAGCGCTTGTTGTAAT 1470 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| ||| || || | | || || |||| || ||||||||||| ||||| Sbjct 1469 GGGCCAACCGGGACGCTTCCGCCGCAATCCGCTCGAAGATATCGTTGACAAAGCTGTTCA 1410 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 | || ||| | || |||||||| |||||| || |||||||| ||||| |||| Sbjct 1409 TAATGCTCATGGCCTTCGACGAGATGCCGGTGTCGGGATGGACCTGCTTCAGCACTTTGT 1350 Query 1485710 AAA 1485712 ||| Sbjct 1349 AAA 1347 >seq5733 Length=11217 Score = 102 bits (112), Expect = 1e-15 Identities = 156/220 (71%), Gaps = 7/220 (3%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 ||||||||||| |||| ||||| || || || ||||| ||||| |||||| Sbjct 2372 CCTTCGTCGCGCGAAATCAGCTCGTTCGAGAACGTCAGTCCCGGCATCAGGCCACGCTTC 2431 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| || ||||| || || || ||| |||||||| |||||||| ||||| Sbjct 2432 TTGAGCCAGAAAATGGCGGCAAAGCTACCGCTGAAGAAGATGCCTTCGACGGCCGCAAAC 2491 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTT--TGTTGATCCACTTCATCGCCC 794518 | |||| || || || ||||| |||| |||| | |||||| |||| |||| Sbjct 2492 GCCACGACACGTTC-GCCAAAGT----TGGCCTTCTTGCTCGAGATCCAGTTCAGTGCCC 2546 Query 794519 ACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGC 794558 | |||||||| ||| | || | |||| ||| || ||||| Sbjct 2547 AGTCTGCCTTCTTCTTTACGCACGGCAACGTTTCAATGGC 2586 >seq699 Length=39807 Score = 91.5 bits (100), Expect = 2e-12 Identities = 140/198 (71%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 2035566 GACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCG--AGGTCGACCAAC 2035623 || ||||||||||| ||||| ||||||| | | ||| | |||| ||||| Sbjct 32970 GAAAAGCGCACCGATGACATCAGTTCGTGGGAT--GCCGATTTCCTGAAGGTGGACCAGG 33027 Query 2035624 CCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATT 2035683 ||| | ||||| || || || || || |||||| | ||||| ||| | || ||| Sbjct 33028 GTACCTTGTTTGAATTAATACTGGCAGCTAACTACTTGGACATTAAGGGTTTACTGGATG 33087 Query 2035684 TGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGA 2035743 || ||||||||| ||||| ||| | ||||||||||| | || || || || || |||| Sbjct 33088 TGACGTGCAAGACGGTGGCAAACATGATCAAGGGCAAAACCCCGGAAGAGATTCGAAAGA 33147 Query 2035744 CCTTTAACATCAAGTACG 2035761 | || ||||| ||| ||| Sbjct 33148 CGTTCAACATTAAGAACG 33165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914527174345118