Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1402 147 1e-30 seq3723 138 7e-28 seq48 113 3e-20 >seq1402 Length=30251 Score = 147 bits (162), Expect = 1e-30 Identities = 162/214 (76%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||||| |||| ||||||||||||||| ||||| || || |||| | || Sbjct 9252 AGCACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGTGTGCGACCGTCC 9193 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| ||||| |||||||| || ||||| || |||| | |||||||| || Sbjct 9192 TCCAGCTGCTTACCGGCAAAGATCAGACGCTGCTGATCCGGCGGGATGCCCTCCTTATCC 9133 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || |||| || || |||||| |||| ||| |||| Sbjct 9132 TGGATCTTCGCCTTCAC--ATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGG 9075 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| ||||||||||| || || ||||||||||| Sbjct 9074 TCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 9041 >seq3723 Length=15797 Score = 138 bits (152), Expect = 7e-28 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| ||||| || | ||| |||||||||||||| ||||||||||| |||| |||| Sbjct 4029 CAGCACCAGATGGAGGGTAGATTCCTTCTGAATGTTGTAGTCCGATAGTGTGCGGCCATC 4088 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| ||||||||||| || || ||||| ||| | || | ||||||||||| Sbjct 4089 CTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTC 4148 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || ||| || || | | |||| || | |||||| |||| || ||||| Sbjct 4149 CTGGATCTTTGCCTTCACATTTTCGATCGTGTCCGATGGCTCGACCTCAAGTGTGATGGT 4208 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 ||| || ||||| || || || || ||||||||||| Sbjct 4209 CTTGCCGGTGAGCGTTTTCACGAAAATCTGCATGAT 4244 >seq48 Length=116589 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | ||| ||||||||| ||||| ||||| || || | || | || Sbjct 116541 AGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCT 116482 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| ||||||||||||| || ||||| ||| | || | ||||||||||| Sbjct 116481 TCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCC 116422 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | |||| || | |||||| || | || |||||| Sbjct 116421 TGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGATGGCTCGACCTCCAGCGTGATGGTC 116362 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || ||||| || ||||||||||| Sbjct 116361 TTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 116330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325628646864278