Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq1402 100 2e-16 seq851 87.8 1e-12 >seq1402 Length=30251 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 107548 GGTTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGG 107607 |||| || ||||| || || |||||||| | || || || ||||||||| | || | Sbjct 9033 GGTTCAAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCG 9092 Query 107608 AGGCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCG 107667 || | ||||| ||| | || || ||||| ||||| || ||| | || Sbjct 9093 AGCCCTCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCGC 9152 Query 107668 TGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGG 107727 |||||||||| | || || | ||| ||||| ||||||||||||| ||| || | | Sbjct 9153 CGGATCAGCAGCGTCTGATCTTTGCCGGTAAGCAGCTGGAGGACGGTCGCACACTGTCCG 9212 Query 107728 ACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||||||||||| |||||||| || | ||| ||||| Sbjct 9213 ACTACAACATTCAGAAGGAGTCCACCCTTCACCTGGTG 9250 >seq851 Length=34397 Score = 87.8 bits (96), Expect = 1e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 103857 AGGATTGGCCCCGGAGTCTGAAACAGAAACCGGAGAAGATGGCCGAAGCCGGATTCTACT 103916 |||||||||| | ||||| || || ||| | || || || ||||| |||| | Sbjct 5004 AGGATTGGCCAACGTCACTGAAGCAAAAGCCGAAACAGTTGAGTGATGCCGGCTTCTTTT 5063 Query 103917 ACACCGGCCACAGCGACAACACGAAATGCTTCTACTGCGACGGTGGTCTAAAGGATTGGG 103976 | |||||| | || || ||| |||||| ||||| ||||| |||||||| |||| Sbjct 5064 ATACCGGCAAGAGTGATCGGGTGAAGTGCTTCAGCTGCGGTGGTGGCCTAAAGGACTGGG 5123 Query 103977 AGCACGATGATGAGCCGTGGCAACAACACGC 104007 | || ||||||||||||||| |||| ||||| Sbjct 5124 AACAGGATGATGAGCCGTGGGAACAGCACGC 5154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398798231491618