Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1095 122 7e-22 seq6608 91.5 1e-12 >seq1095 Length=35156 Score = 122 bits (134), Expect = 7e-22 Identities = 550/865 (64%), Gaps = 14/865 (2%) Strand=Plus/Minus Query 282018 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 282077 |||| |||| ||||||| ||||| | ||||| | | || ||||| || || || | Sbjct 22841 AATCGGTTCCCTCGAACAGCGAATCGATCTCAATGCTGGCCTGCGTCGACGAGGACAGCG 22782 Query 282078 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTT--TTGCTGATTGATT 282135 ||| || ||||| || ||||| || | || | || | ||| ||| || | || Sbjct 22781 TACGCTTTGCACGCTCGCATGCCGTGCGCAGACGACGCAGGGCACGCTTGTTGGTGGA-- 22724 Query 282136 CAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATC 282195 || ||| | || | ||| | |||||| || | | | | | || ||||| || || Sbjct 22723 CAGATCCTTCTTGTGTTTACGCTTGAATTCCTGAGCGAAGTGGTTCACCAGACGGTTGTC 22664 Query 282196 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 282255 || || ||||| |||| | ||| | ||| | || | | || | ||| | ||||| Sbjct 22663 GAAGTCCTCACCACCCAGATGAGTGTCTCCGGCGGTCGACTTGACCTCGAAGATACCATC 22604 Query 282256 TTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 282315 || | |||| | | ||||| ||| || ||||| | ||| || || || ||||| Sbjct 22603 GTCGATGGACAGGATCGACACATCGAAGGTACCGCCACCAAGATCGAAGATCAGCACATT 22544 Query 282316 CATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATT 282375 || | || || || || ||||| || |||| || || || || || || || Sbjct 22543 GCGCTCACCGGCTGTCTTCTTGTCCAGACCGTAGGCAATGGCGGCTGCGGTCGGCTCGTT 22484 Query 282376 AATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTG 282435 || || | || || || | || | ||| |||| ||||| || || || || | || Sbjct 22483 GATGATACGCAGCACGTTCAATCCTGAAATGGTTCCGGCATCCTTCGTCGCCTGGCGCTG 22424 Query 282436 TGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATA 282495 ||||| || || || || || || ||||| ||||| | ||| || || || | || Sbjct 22423 CGAATCATTGAAGTAGGCTGGCACGGTAATGACGGCGTTTGTAACCGTCTTGCCCAGGTA 22364 Query 282496 AGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG--AGAA 282553 ||| || |||| ||||| || | | | ||| || | | ||| || |||| Sbjct 22363 AGCTTCGGCCGTTTCCTTCATCTTGGTCAGCACCATCGAACTGACCTCTTCCGGGAAGAA 22304 Query 282554 T-ATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAAT 282612 ||| ||| | || | || || ||| | |||||| || || | Sbjct 22303 ACATTTCTTCTCGCCCTTGT---ATTCGACCGCAATCTTTGGTTTGC--CCTCGATCGAC 22249 Query 282613 A--ACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTA 282670 || | || ||||| | ||||| || | || | | || | ||| | | Sbjct 22248 TCCACCTCGAACGGCCAGTGCTTCATGTCGGCCTGGATGGCGGGATCGTCAAACTTACGG 22189 Query 282671 CCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTG 282730 ||||| | || || ||||| || || |||||||| || || | || | || | ||| Sbjct 22188 CCAATCAGACGCTTGGCATCGAAGATTGTATTGGTCGGGTTCATGGCCACCTGGTTCTTG 22129 Query 282731 GCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGA 282790 || ||||| ||||||||| | || || || || || | |||||| ||||| || || || Sbjct 22128 GCAGCATCGCCAATCAGACGCTCCGTGTCAGTGAAGGCAACATACGATGGTGTGGTTCGG 22069 Query 282791 TTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTA 282850 || || || ||||| ||||| ||||| ||||| || | || | || || ||||| || Sbjct 22068 TTTCCCTGGTCATTGGCAATGATTTCTACTTTGCCGTGCTGGAACACTCCGACACAGCTG 22009 Query 282851 AAAGTTGTTCCTAAATCAATACCAA 282875 | || || || | ||||||||||| Sbjct 22008 TAGGTCGTGCCCAGATCAATACCAA 21984 >seq6608 Length=7582 Score = 91.5 bits (100), Expect = 1e-12 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 637135 TCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGATCAACTATTATTGGT 637194 || || || ||| | ||||| ||||||||| | || ||||| | || || || |||||| Sbjct 1141 TCGTCGCCCAATGTGGCTAAGGAAATGCATGTCGGGCATTTGCGTTCGACCATAATTGGT 1200 Query 637195 GAATCTATTTGTAGGGTATTAGAAATGTGTGGAC-ACGATGTTTATCGTATTAATCATGT 637253 || || |||||| | | | || | ||||| | | ||||| ||||||||| ||| | Sbjct 1201 GATTCGATTTGTCGTTTCCTGGAGTT-TGTGGGCCATGATGTACTTCGTATTAACCATAT 1259 Query 637254 GGGTGATTGGGGAACTCAATTCGGTATGTTAATTGCT 637290 || || |||||||| || || || |||||||||||| Sbjct 1260 CGGAGACTGGGGAACGCAGTTTGGCATGTTAATTGCT 1296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739836914100612