Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq2 168 7e-37 seq5733 109 5e-19 seq3723 82.4 7e-11 >seq2 Length=295332 Score = 168 bits (186), Expect = 7e-37 Identities = 820/1286 (64%), Gaps = 44/1286 (3%) Strand=Plus/Minus Query 150720 GGTTGACAACTTGAAATTCGCCCGACAAAACACGTC--TCAAAAACAAATTACTGTGAAA 150777 |||| || || || || ||||||||||| ||||||| | | |||| | |||| | Sbjct 211737 GGTTCACCACCTGGAACTCGCCCGACAACACACGTCGATTATAAACGTTCGA-TGTGTA- 211680 Query 150778 CGGTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGC 150837 ||| || || ||||| |||||| | |||||| || || | || |||||||| || Sbjct 211679 CGGCTCGAAAGACTCATTGTTGCCCAATATTTGCGCCGTTGAAGCGGTCGGCATCGGAGC 211620 Query 150838 CACAAGCAATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAACTGTGACCAGTC 150897 || ||| ||||||||||| | ||||| ||| ||| ||| ||| |||| | ||||| Sbjct 211619 CAAAAGTAATGAATTACGAATTCCGTGCTTTGCTATCTTTTCTTTTAACTCGGCCCAGTT 211560 Query 150898 CCATAACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTTT 150957 ||||| |||||| || | ||||||| ||||| || |||| |||| ||| | Sbjct 211559 CCATAGATCCGTCGGTTCCTTGTTCCACATTTCGTACTGTAATACGCCTTTGCTTACCGG 211500 Query 150958 GCTACCGGCAAACGTGCTATAAGGCTCACTAACAGAT--GCCAGTTCGTAACTGGCCTCG 151015 || || || |||| || || | | | | || | ||| |||| || || Sbjct 211499 ACTTCCTTCATACGTCTCGTACGG--ACCGTCCCGTTCGGCTAACTCGCAACTCGCTTCC 211442 Query 151016 AGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCTC 151075 |||||| ||| || | |||||| ||||||| ||||| ||| | ||||| Sbjct 211441 AGCGCACCATAGTAAATGGTTTCAAATATTTGTTGATTCAGCTTTTGGGCCTCTTCGCTT 211382 Query 151076 ACGTACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCTATGCCGATG 151135 ||||||| ||||| | || ||||||||||||| |||||| | || || || ||| Sbjct 211381 TCGTACGGATAGCGCATTAAAATGAATGCATCGGCCATACCTTGCACACCGATTCCAATG 211322 Query 151136 GGACGATGGCGCATATTAGAtttttttGCAGTTTCAATA--GGGTAGAAATTGCGATCAA 151193 || | |||||||| ||||| || || | | || || ||| | ||| ||| | Sbjct 211321 GGCCTGTGGCGCATGTTAGAGCGCTTCGC--CTCCGGTACTGGATAGTAGTTGATATCGA 211264 Query 151194 TAATTTTATTCAAA---CTATTCACTACATGTTTGACCACAGTGTGCAATAGTTGAAAAT 151250 | ||||| |||| | | |||| | | ||| | | || || ||||| Sbjct 211263 TTATTTTGTTCAGATTGCGCGTCACAATCTTAGCGACTTCCTTAAGCTTTA---CAAAAT 211207 Query 151251 CAAAAG---TATCATTATTGATATATTTATTGACGGCAATCGACGCTAGATTACATACGG 151307 | ||| | || | || | | | || | ||| ||||| || |||||||| || | Sbjct 211206 CGTAAGTCTTGTCTGTCTTTACGAACATGTTTAGGGCGATCGAAGCCAGATTACACACTG 211147 Query 151308 CAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCA 151367 || ||||||| || | || | ||| || || | ||||| || ||| ||||| Sbjct 211146 CAATTTCGTCTTTCGATGAGTACTCTACAATCTCTGTGCACAAGTTAGAGCACTTTATGG 211087 Query 151368 ATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTG 151427 || ||| |||||||||||| || ||||| || |||||||| | ||| |||||| Sbjct 211086 TGCCAACATTCTGTTGATTGCTTTTACGATTGCATGCATCCTTGTACAGCATATACGGTA 211027 Query 151428 TGCCGGTTTCGGCTTGAATTTCTATAATGTTTCGCATTAATGTAACCGCGGGCATTTGCT 151487 ||| ||||| | || ||| |||| || |||| || | | || || || Sbjct 211026 CGCCCGTTTCCACCTGCGATTC---AATGATT-GCATACCACAAATCCTGTGCCCTTACT 210971 Query 151488 CG-CGA---AACTGGCCTTTATCCTCATAATGTTTGTACCAGTAT-TCAAAGTCATCACC 151542 | ||| || | || | | ||| ||| | |||| |||| | || || || ||||| Sbjct 210970 TGTCGAATGAATCGTCCCTCCTTCTCGTAACGCGTGTA-CAGTGTCTCGAACTCTTCACC 210912 Query 151543 ATACGTATCGTTGAGCTTAGGACACTCGTTAGGACACATTAATGACCATATACCGTTTTC 151602 | || || | | |||||| |||| ||| ||||| | ||| || |||| | Sbjct 210911 CCAAGTTTCCGCCAACCCAGGACAATCGTGAGGGCACATCAGACTCCACATTTCGTTAGC 210852 Query 151603 TTCAACGCGTTTCATAAATATATCCGGAACCCATAATGCGTTCATCAAATCACGCGCTTT 151662 || || ||||||||||| | |||||| | ||| || |||| | || ||||| || Sbjct 210851 CTCTACCCGTTTCATAAACAGATCCGGTATCCACAAAGCGTAGAACATGTCACGTGCACG 210792 Query 151663 GGTGTCTTCGCTGCCAATGTTTCGACGCATGTGTAAAACGTCCATAATGTCGCAATGCCA 151722 || || |||| ||||| || | | || || | | || | |||||| Sbjct 210791 CACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCGAATACATCACCATGCCA 210732 Query 151723 CGGTTCAACGTACACTGCTTGGGCGCCTTTTCG---CTTGCCACCTTGATCCACGTGACG 151779 ||||| | ||| | || || || ||| |||||||| |||||||| | || Sbjct 210731 TGGTTCGAGGTATATGGCAAAAGCTCCCGGTCGTTTGTTGCCACCCTGATCCACATATCG 210672 Query 151780 CACCATATTATTAAAAACTCGCAGCATTGGTAGCAGTCCGCTGGCGGTGCCGTTCGT--- 151836 | | || || | ||||||||||| |||| || ||| | | | |||||||| Sbjct 210671 GGCTGTGTTGTTGTACACTCGCAGCATCGGTACCAACCCGTTCGAAATCCCGTTCGTGCC 210612 Query 151837 --AGATTTTATTTTGCTGTTGCGGCCGCGTACGCTGTTCACGTTCAATCCAATACCGCCG 151894 ||| | || || | | | |||| | | || || |||| ||||| ||||| Sbjct 210611 TGAGA-TGTACGTTCCCTTCG----CGCGAATACAGTGAACATTCAGCCCAATTCCGCCT 210557 Query 151895 CCGTGTTTAGAGATCATGGCGCAATCGTTTAATGTGTTATAGATGCCGCGAATGCTATCG 151954 | ||| || |||| || || | |||| || | |||||| || ||| |||||| Sbjct 210556 GCTGATTTTGAAATCAGCGCACACTGCTTTAGCGTATCATAGATACCTTCAATACTATCG 210497 Query 151955 CTTTCCATGGTCAATAGAAAACATGA 151980 |||||| | |||||||| || Sbjct 210496 TCAGACATGGTTAGCAGAAAACAAGA 210471 >seq5733 Length=11217 Score = 109 bits (120), Expect = 5e-19 Identities = 160/221 (72%), Gaps = 8/221 (4%) Strand=Plus/Minus Query 50223 GTGCGTAAA----AAGGACGATTGGGCATTGAAATGGACTaaaaacaaaaaa-CTTACTT 50277 ||||||||| |||| || |||||| |||| |||| | ||| || | |||| Sbjct 2569 GTGCGTAAAGAAGAAGGCAGACTGGGCACTGAACTGGATCTCGAGCAAGAAGGCCAACTT 2510 Query 50278 TGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGCTTTG 50337 |||| |||||| | ||||||||||| || ||||| | || || ||||||||||| Sbjct 2509 TGGC-GAACGTGTCGTGGCGTTTGCGGCCGTCGAAGGCATCTTCTTCAGCGGTAGCTTTG 2451 Query 50338 CAGCCATATTTTACATTAA-AACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAACGAG 50396 | ||||| || | | || || | | ||| | ||||| || || ||||| |||||| Sbjct 2450 CCGCCATTTTCTGGCTCAAGAAGCGT-GGCCTGATGCCGGGACTGACGTTCTCGAACGAG 2392 Query 50397 TTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGCGTG 50437 |||||||||||||||||||| ||||| |||||||| || Sbjct 2391 CTGATTTCGCGCGACGAAGGACTGCACTGCGACTTTGCCTG 2351 >seq3723 Length=15797 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 137197 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 137256 |||| || | ||| | |||||||| || || |||||||| || | ||||| Sbjct 4027 CGCAGCACCAGATGGAGGGTAGATTCCTTCTGAATGTTGTAGTCCGATAGTGTGCGGCCA 4086 Query 137257 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 137316 || || || || || || || |||| ||||| |||||||| || || || || || ||| Sbjct 4087 TCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTG 4146 Query 137317 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACC 137376 || || ||| || | | ||| | |||||| | || || || |||| || | Sbjct 4147 TCCTGGATCTTTGCCTTCACATTTTCGATCGTGTCCGATGGCTCGACCTCAAGTGTGATG 4206 Query 137377 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||||||||||| | ||||| ||||| || ||||| Sbjct 4207 GTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCAT 4241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488445301898400