Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq48 136 8e-27 seq2169 111 3e-19 >seq48 Length=116589 Score = 136 bits (150), Expect = 8e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | || ||| || || ||||||| || || || ||||| || || || || | Sbjct 116558 TACCTCCACGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGG 116499 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | |||||||| || || || || || ||||| | | || |||||||||| Sbjct 116498 ACAGAGTACGTCCGTCTTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAG 116439 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || ||||| || || || || || ||||| || || || | Sbjct 116438 GAATGCCCTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGATGGCTCGA 116379 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | |||| || || |||||||| |||| |||||| || || ||||||||| Sbjct 116378 CCTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCATT 116329 >seq2169 Length=21917 Score = 111 bits (122), Expect = 3e-19 Identities = 212/310 (68%), Gaps = 2/310 (1%) Strand=Plus/Plus Query 198312 CTCGAAAAGGCGGAAACACATGACCCTCTATGGAATGCATCGCAAATACAGATGATAAGA 198371 || || | ||| |||| || ||| ||| ||||| | | || | |||||| | | Sbjct 3659 CTGGAGACGGCCAAAACGCACGACGATCTGTGGAACTCGGCCCAGCTGCAGATGGTGCGG 3718 Query 198372 GAAGGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGACA 198431 ||||| || ||||| | ||| | | ||||||||||| || |||||||| || ||||| Sbjct 3719 GAAGGCAAGATGCACGGCTTTCTGCGGATGTACTGGGCGAAGAAGATACTGGAGTGGACG 3778 Query 198432 AGAACACCGGAAGACGC-TTTGAGTTATAGTATCTATCTAAACAATAAGTACGAACTAGA 198490 | ||||||||| || || | ||| | |||||||| ||| || |||| || || Sbjct 3779 AAAACACCGGAGGAGGCGCTCGAGACGGCG-ATCTATCTGAACGATCGGTACAGCCTGGA 3837 Query 198491 CGGCACGGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACATGATCG 198550 || ||||| ||||| ||||| || || |||||||| || ||| |||| |||| Sbjct 3838 TGGGCGCGATCCGAACGGGTACGTCGGGTGCATGTGGTCGATCGCGGGAATACACGATCA 3897 Query 198551 AGCGTGGAAAGAAAGACCTATATTTGGGAAGATAAGATATATGAATTATGAGGGTTCTAA 198610 | ||||| || | || ||||| || || | || ||||| |||||||| | || Sbjct 3898 GGGATGGAAGGAGCGGGAAATTTTTGGCAAAATTCGTTACATGAACTATGAGGGCTGCAA 3957 Query 198611 GAAAAAATTT 198620 | |||||| Sbjct 3958 GCGTAAATTT 3967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981623887518918