Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2 271 7e-68 seq5733 140 3e-28 seq3723 129 6e-25 >seq2 Length=295332 Score = 271 bits (300), Expect = 7e-68 Identities = 986/1524 (65%), Gaps = 38/1524 (2%) Strand=Plus/Minus Query 148251 AGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTC 148310 |||| || ||||||||||| |||||||| | | ||| || || ||| ||||| Sbjct 211744 AGATGATGGTTCACCACCTGGAACTCGCCCGACAACACACGTCGATTATAAACGTTCGAT 211685 Query 148311 GTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATG 148370 || |||| || || ||||| ||||||||||| || ||||| || | || || ||||| Sbjct 211684 GTGTACGGCTCGAAAGACTCATTGTTGCCCAATATTTGCGCCGTTGAAGCGGTCGGCATC 211625 Query 148371 TACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCC 148430 || | || | || || || | ||| | ||| ||| || || | | ||| Sbjct 211624 GGAGCCAAAAGTAATGAATTACGAATTCCGTGCTTTGCTATCTTTTCTTTTAACTCGGCC 211565 Query 148431 CAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTA 148490 |||| ||| || || |||| | ||||||||| |||||||| | | ||| ||| Sbjct 211564 CAGTTCCATAGATCCGTCGGTTCCTTGTTCCACATTTCGTACTGTAATACGCCTTTGCTT 211505 Query 148491 GCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCC 148550 | || || || || |||| |||||| |||| | | || | ||||| ||||| Sbjct 211504 ACCGGACTTCCTTCATACGTCTCGTACGGACCGTCCCGTTCGGCTAACTCGCAACTCGCT 211445 Query 148551 TCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCG 148610 || ||||| || |||||||| || || ||||| || ||| ||| ||| Sbjct 211444 TCCAGCGCACCATAGTAAATGGTTTCAAATATTTGTTGATTCAGCTTTTGGGCCTCTTCG 211385 Query 148611 CTTTCGTACGGCATA-CGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCC 148669 ||||||||||| ||| |||| | || || ||||| | || || || || | || Sbjct 211384 CTTTCGTACGG-ATAGCGCATTAAAATGAATGCATCGGCCATACCTTGCACACCGATTCC 211326 Query 148670 AATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC-GGATAGTGGTTGCGGT 148728 |||||||| ||| ||||| ||| | ||| ||| | | ||||||| |||| | Sbjct 211325 AATGGGCCTGTGGCGCATGTTAGAGCGCTTCGC-CTCCGGTACTGGATAGTAGTTGATAT 211267 Query 148729 CGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAAT 148788 |||| || |||| ||||||||| ||| | ||| | | | ||| | |||||| Sbjct 211266 CGATTATTTTGTTCAGATTGCGCGTCACAATCTTAGCGACTTCCTTAAGCTTTACAAAAT 211207 Query 148789 CGTA---CTTGTCA---TCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACA 148842 |||| |||||| | ||||| ||| ||| | |||||| || || ||||| |||| Sbjct 211206 CGTAAGTCTTGTCTGTCTTTACGAA-CAT--GTTTAGGGCGATCGAAGCCAGATTACACA 211150 Query 148843 CGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGA 148902 | || | || || | ||||||||| ||||| | ||||| || ||| || | Sbjct 211149 CTGCAATTTCGTCTTTCGATGAGTACTCTACAATCTCTGTGCACAAGTTAGAGCACTTTA 211090 Query 148903 TCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACG 148962 | ||| || |||| ||||||||| || | ||||| || |||||||||||||| |||| Sbjct 211089 TGGTGCCAACATTCTGTTGATTGCTTTTACGATTGCATGCATCCTTGTACAGCATATACG 211030 Query 148963 GTCCGCCAGTTTCCACCTGCGTTTCCACTAT--GAACCGATGCAGGTCCTGCGCGCGCAC 149020 || |||| ||||||||||||| ||| | || | | | || ||||| || | || Sbjct 211029 GTACGCCCGTTTCCACCTGCGATTCAATGATTGCATACCA--CAAATCCTGTGCCCTTAC 210972 Query 149021 TTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCGCTCGAACGCCTCGCC 149080 ||| | | | || ||||||| |||||| || ||||| ||||||| | || || Sbjct 210971 TTGTCGAATGAATCGTCCCTCCTTCTCGTAACGCGTGTACAGTGTCTCGAACTCTTCACC 210912 Query 149081 GTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGC 149140 | || | | || || || | ||| |||||||| || ||||| ||| || Sbjct 210911 CCAAGTTTCCGCCAACCCAGGACAATCGTGAGGGCACATCAGACTCCACATTTCGTTAGC 210852 Query 149141 GTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTT 149200 | || || |||||||||||||| || | ||| | ||||| | | ||| || | | Sbjct 210851 CTCTACCCGTTTCATAAACAGATCCGGTATCCACAAAGCGTAGAACATGTCACGTG-CAC 210793 Query 149201 GCA-GTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCC 149259 ||| || || ||| |||| ||| | || | ||||| || | |||| Sbjct 210792 GCACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCGAATACATCACCATGCC 210733 Query 149260 ACGGCTCAATGTACACCGCGAGCGCGCCCTTGCG---CTTGCCGCCCTGGTCGACGTGGC 149316 | || || | ||| | || | || ||| || ||||| ||||| || || | | Sbjct 210732 ATGGTTCGAGGTATATGGCAAAAGCTCCCGGTCGTTTGTTGCCACCCTGATCCACATATC 210673 Query 149317 GCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGTTAGT-- 149374 | | ||||||| ||||||| | ||| ||| | | || | | | | ||||| || Sbjct 210672 GGGCTGTGTTGTTGTACACTCGCAGCATCGGTACCAACCCGTTCGAAATCCCGTTCGTGC 210613 Query 149375 -AGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGCCGC 149433 ||| ||| | || ||| || | ||| || || | || || ||||| Sbjct 210612 CTGAG---ATGTACGTTCCCTTCGCGCGAATACAGTGAACATTCAGCCCAATTCCGCCTG 210556 Query 149434 CGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGC 149493 | | ||||| || ||| || | ||||| ||||| || || || || ||| Sbjct 210555 CTGATTTTGAAATCAGCGCACACTGCTTTAGCGTATCATAGATACCTTCAATACTATCGT 210496 Query 149494 GCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAACA 149553 |||||| |||||||| || || ||| || ||| |||| | ||||| |||| Sbjct 210495 CAGACATGGTTAGCAGAAAACAAGATGACAGCTGTGGACGTTGCGTAGCTGCCGCAAACA 210436 Query 149554 TGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACGACTCGAGCACGC 149613 |||| || ||| || |||||||| || | || | ||| | ||||| | Sbjct 210435 TGGTCGGTGAGGCATGGGTAAAATAACGCTCCGAAAGCAAGTTGTATGTCTCGATGGCTG 210376 Query 149614 GGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCT 149673 || ||||| || ||||| || || || || |||||||||| ||| |||||||| || | Sbjct 210375 CATCGATGTCTTCACCATGTATACCGATCGCAACGCGCATCAACATGTGCTGCGGACGTT 210316 Query 149674 CCGCCACTTTGTTTCC---AATTTTGAGCAAGTAG--CCGTTTTCTAGTGTCTTGTAGCC 149728 | || | || || || || | ||| ||| ||| ||| | ||| ||| | || Sbjct 210315 ---CAACAATCTTACCCTTGATCTTCAACAAATAGGACCG--TTCCAATGTTTTGAACCC 210261 Query 149729 AAAGTACTTGTAGTCAAAGTCGCG 149752 |||||| ||||| |||| ||||| Sbjct 210260 AAAGTAGTTGTATCCAAAATCGCG 210237 >seq5733 Length=11217 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 120639 CAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGT 120698 |||||| |||||||| |||||| || ||||||||||| ||||||||||| ||||| Sbjct 2347 CAGGCAGGCAAAGTCGCAGTGCAGTCCTTCGTCGCGCGAAATCAGCTCGTTCGAGAACGT 2406 Query 120699 CAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAA 120758 ||| || ||||| | ||| | |||||| |||| |||||||||||||| || || Sbjct 2407 CAGTCCCGGCATCAGGCCACGCTTCTTGAGCCAGAAAATGGCGGCAAAGCTACCGCTGAA 2466 Query 120759 GAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCT 120818 ||| | ||| || ||| ||||| || || | || ||| | || | ||| ||||||| Sbjct 2467 GAAGATGCCTTCGACGGCCGCAAACGCCACGACACGTTCGCCAAAGTTGGCCTTCTTGCT 2526 Query 120819 GTCGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCA 120865 |||||| |||| ||||| || ||||| || |||||||||| Sbjct 2527 CGAGATCCAGTTCAGTGCCCAGTCTGCCTTCTTCTTTACGCACGGCA 2573 >seq3723 Length=15797 Score = 129 bits (142), Expect = 6e-25 Identities = 154/207 (74%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGC 133514 ||| | ||| || || ||||| || ||||| || | || ||| || ||||| ||| Sbjct 4038 ATGGAGGGTAGATTCCTTCTGAATGTTGTAGTC--CGATAGTGTGCGGCCATCCTCCAGC 4095 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| ||| | ||||| |||||||| || || ||||| || |||||||| |||| Sbjct 4096 TGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATC 4155 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 ||| ||| | | || | |||||| | ||||| || || | |||| ||| |||||| Sbjct 4156 TTTGCCTTCACATTTTCGATCGTGTCCGATGGCTCGACCTCAAGTGTGATGGTCTTGCCG 4215 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATG 133661 || || ||||| ||||||||||||||| Sbjct 4216 GTGAGCGTTTTCACGAAAATCTGCATG 4242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483323136912880