Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq2 320 2e-82 seq5733 114 1e-20 seq48 98.7 9e-16 seq1402 96.9 3e-15 seq3723 86.0 6e-12 >seq2 Length=295332 Score = 320 bits (354), Expect = 2e-82 Identities = 1202/1857 (65%), Gaps = 40/1857 (2%) Strand=Plus/Minus Query 146575 GCAGGTTTTGTGCGCAAATAATACATGCCCGTTTTGAGGCCACATCG-CCACGAGTGATT 146633 || || || ||||||||||||||||||||||| || | || |||| ||| || Sbjct 212053 GCCGGCTTGGTGCGCAAATAATACATGCCCGTCTTCAATCC-CATCTTCCAGCCGTAGAA 211995 Query 146634 GTGAATCGAAGTCATGATGGCGTACGTCGGCTCCGCCACGAAAAGATTAAACGATTGGCT 146693 || ||||| || | || | || ||||||| || ||| | || |||||||| Sbjct 211994 ATGGATCGACGTGAGCTTGCCATAGTTCGGCTCGGCTACGTGTATGTTGAACGATTGTGA 211935 Query 146694 TTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCAAT-CATGCGTTTTGTCTTCATTT 146752 |||||| ||||| || || ||||| ||||| | ||| |||| |||| | |||| Sbjct 211934 TTGATCAATGAATGCACCTCGATCGGCAGCCATTTTAATGCATGT-TTTTACCGAGATTT 211876 Query 146753 CCCAAGCGGTTTTGTACAGCCC-CTTAACGCTATCTGGAATACCTTCAATGTTTTGAATA 146811 |||| | ||||||||||| | | | | || | |||||| ||| ||| |||| || Sbjct 211875 CCCACACTGTTTTGTACAGGTCACGGATCTCTTT-TGGAATTGTTTCTATGCTTTGGATG 211817 Query 146812 GAGCCCTTGTGCGCAAAAATAGTGTTTCGTATTTCGGGCGTGTAAAGGTTTAGTTTAATG 146871 || || || | | || || |||| || ||| | | || | | | Sbjct 211816 GATCCATTATTGGACAAGATGTTGTTCTTCATATCGAGATCCCACAGCCCCATCGCAGTC 211757 Query 146872 AGGTCATCAATTAAATACTGATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGA 146931 || || | | | || || || ||||| || |||||||||| || |||||||| | Sbjct 211756 AGATCTTGCAGGAGATGATGGTTCACCACCTGGAACTCGCCCGACAACACACGTCGATTA 211697 Query 146932 TACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTT 146991 || || || ||| | ||||| ||||||||||| ||||| |||||||| ||||| | Sbjct 211696 TAAACGTTCGATGTGTACGGCTCGAAAGACTCATTGTTGCCCAATATTTGCGCCGTTGAA 211637 Query 146992 GCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCC 147051 ||||| ||||| |||| | |||||||| || | |||| | || || || Sbjct 211636 GCGGTCGGCATCGGAGCCAAAAGTAATGAATTACGAATTCCGTGCTTTGCTATCTTTTCT 211577 Query 147052 TTCAAAGTTTGCCAGTCCCACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGC 147111 || || ||||| ||| | || || | ||||||||| |||||||| | Sbjct 211576 TTTAACTCGGCCCAGTTCCATAGATCCGTCGGTTCCTTGTTCCACATTTCGTACTGTAAT 211517 Query 147112 ACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAAT 147171 || ||| || | ||||| || | |||| ||| ||||| || | || || Sbjct 211516 ACGCCTTTGCTTACCGGACTTCCTTCATACGTCTCGTACGGACCGTCCCGTTCGGCTAAC 211457 Query 147172 TCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACG 147231 || || || || || ||||| |||||||| |||||||| ||||||| || || Sbjct 211456 TCGCAACTCGCTTCCAGCGCACCATAGTAAATGGTTTCAAATATTTGTTGATTCAGCTTT 211397 Query 147232 GTCGCTTCTTCGCTCTCGTAAGGCATA-CGCAGAAGCACAAAGGCATCGGCCAAACCCTG 147290 || |||||||| ||||| || ||| |||| | | || |||||||||| ||| || Sbjct 211396 TGGGCCTCTTCGCTTTCGTACGG-ATAGCGCATTAAAATGAATGCATCGGCCATACCTTG 211338 Query 147291 GATACCGACGCCGATAGGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCTATGGGATA 147350 | ||||| || || || | || ||| ||||||||| || || ||||| Sbjct 211337 CACACCGATTCCAATGGGCCTGTGGCGCATGTTAGAGCGCTTCGCCTCCGGTACTGGATA 211278 Query 147351 GTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAG 147410 || |||| ||| || || ||||| || || ||| |||| |||| | | || || Sbjct 211277 GTAGTTGATATCGATTATTTTGTTCAGATTGCGCGTCACAATCTTAGCGACTTCCTTAAG 211218 Query 147411 TTTCTCGAAATCATAAGTCCCGTCT-TCGACACGTACGCATTGGTTCACGGCGATAGACG 147469 || | ||||| |||||| |||| || ||| || || ||| | |||||| || | Sbjct 211217 CTTTACAAAATCGTAAGTCTTGTCTGTCTTTACGAAC--AT--GTTTAGGGCGATCGAAG 211162 Query 147470 CCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTG--TACTGCACGATTTCGGCGCACAG 147527 ||||||| || || || | || || ||| || |||| || || || | ||||| Sbjct 211161 CCAGATTACACACTGCAATTTCGTCTT--TCGATGAGTACTCTACAATCTCTGTGCACAA 211104 Query 147528 GTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTT 147587 ||| ||| |||||| || | ||| || ||||||||||| |||||||| || || || Sbjct 211103 GTTAGAGCACTTTATGGTGCCAACATTCTGTTGATTGCTTTTACGATTGCATGCATCCTT 211044 Query 147588 GAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATGCAG 147644 | | ||||| |||||| |||| || || || |||| ||||| ||| | ||| || Sbjct 211043 GTACAGCATATACGGTACGCCCGTTTCCACCTGCGATTCAATGATTGCATACC---ACAA 210987 Query 147645 GTCCTGCGCTCGCACCCGCTGCCGA---TAGCGGCCCTCGTTTTCGTACCGCTCGTACAA 147701 ||||| || | || || ||| | || ||||| || ||||| ||| ||||| Sbjct 210986 ATCCTGTGCCCTTAC---TTGTCGAATGAATCGTCCCTCCTTCTCGTAACGCGTGTACAG 210930 Query 147702 CCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAG 147761 ||| ||||| || || | || || | || ||||| | || || |||||||| Sbjct 210929 TGTCTCGAACTCTTCACCCCAAGTTTCCGCCAACCCAGGACAATCGTGAGGGCACATCAG 210870 Query 147762 CGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTA 147821 |||||| |||| || | || ||| ||||||||||||||| | ||||| ||||| Sbjct 210869 ACTCCACATTTCGTTAGCCTCTACCCGTTTCATAAACAGATCCGGTATCCACAAAGCGTA 210810 Query 147822 CATAAGATCGCGCGCTTTGCA-ATCCTCGGCGCCCATGTTGCGTTTCAAATTAAG-CACG 147879 | | || || || ||| ||||| ||| |||| |||| || || || Sbjct 210809 GAACATGTCACGTGC-ACGCACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAGAAACT 210751 Query 147880 CTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACG---CTTT 147936 | | | | || | ||||| ||||| | ||| | ||| | || || || || Sbjct 210750 CGA-ATACATCACCATGCCATGGTTCGAGGTATATGGCAAAAGCTCCCGGTCGTTTGTTG 210692 Query 147937 CCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCG 147996 || ||||| || |||| || | ||||||| |||| |||| ||| ||| ||| ||| Sbjct 210691 CCACCCTGATCCACATATCGGGCTGTGTTGTTGTACACTCGCAGCATCGGTACCAACCCG 210632 Query 147997 CTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTA 148056 ||| | | ||||| ||| ||| | | || || || | ||| || || Sbjct 210631 TTCGAAATCCCGTTCGTGCCTGAGATGTACGTTCCCTTCGCGCGAATACAGTGAACATTC 210572 Query 148057 ACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCA-ATCGC-CCAATGTCGTGTAGA 148114 | ||||| ||||| | | ||||| || ||||||| | || | || |||| Sbjct 210571 AGCCCAATTCCGCCTGCTGATTTTGAAAT--CAGCGCACACTGCTTTAGCGTATCATAGA 210514 Query 148115 TGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCC 148174 | || || || || |||| | | |||| |||||| || ||| || ||| Sbjct 210513 TACCTTCAATACTATCGTCAGACATGGTTAGCAGAAAACAAGATGACAGCTGTGGACGTT 210454 Query 148175 GCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGC 148234 |||| | |||| || | ||| || || || ||||| | | | || | Sbjct 210453 GCGTAGCTGCCGCAAACATGGTCGGTGAGGCATGGGTAAAATAACGCTCCGAAAGCAAGT 210394 Query 148235 GATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGA 148294 || ||||| || || | |||||||| || || || || || | ||| |||||||| | Sbjct 210393 TGTATGTCTCGATGGCTGCATCGATGTCTTCACCATGTATACCGATCGCAACGCGCATCA 210334 Query 148295 GCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGA 148354 ||||||||| || ||||| ||| | | |||||||| | | ||| ||| | Sbjct 210333 ACATGTGCTGCGGACGTTCAACAATCTTACCCTTGATCTTCAACAAATAGGACCGTTCCA 210274 Query 148355 GGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCGCAT 148411 |||||| | |||||||| ||||| ||||||| | |||||| |||||||| || Sbjct 210273 ATGTTTTGAACCCAAAGTAGTTGTATCCAAAATCGCGATCGTAAATGATGGCCGAAT 210217 >seq5733 Length=11217 Score = 114 bits (126), Expect = 1e-20 Identities = 161/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 46759 TGCCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCA 46818 |||| ||||| || ||||| | ||||| |||| |||||| |||| ||| |||| Sbjct 2573 TGCCGTGCGTAAAGAAGAAGGCAGACTGGGCACTGAACTGGATCTCGAGCAAGAAGGCCA 2514 Query 46819 CGCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTT 46878 | | ||| || | ||||| || ||| ||||||||| | || || || || | Sbjct 2513 ACTTTGGCGAACGTGTCGTGGCGTTTGCGGCCGTCGAAGGCATCTTCTTCAGCGGTAGCT 2454 Query 46879 TTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACG 46938 ||||||||||||| | | || | ||| | |||||||| ||||||||| |||| Sbjct 2453 TTGCCGCCATTTTCTGGCTCAAGAAGCGTGGCCTGATGCCGGGACTGACGTTCTCGAACG 2394 Query 46939 AGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCT 46984 || |||| ||||||||||||||||| ||| |||||||| || || Sbjct 2393 AGCTGATTTCGCGCGACGAAGGACTGCACTGCGACTTTGCCTGCCT 2348 >seq48 Length=116589 Score = 98.7 bits (108), Expect = 9e-16 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | ||||| || | | | ||||| || || |||||||||||| || || Sbjct 116551 ACGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGT 116492 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| ||||| ||||| ||||||| |||| | |||||| ||||||||||| ||||| Sbjct 116491 ACGTCCGTCTTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCC 116432 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || |||| | || | || || | ||||| || || | Sbjct 116431 CTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGATGGCTCGACCTCCAG 116372 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | || || |||||||| || || | ||| |||||||| Sbjct 116371 CGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 116330 >seq1402 Length=30251 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| ||| | |||| || | | | ||||| || ||||||||||||||| || || Sbjct 9261 CGCAGGCGAAGCACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGTGTG 9202 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || || || ||||| ||||||| | |||| |||||||| ||||| || || ||||| Sbjct 9201 CGACCGTCCTCCAGCTGCTTACCGGCAAAGATCAGACGCTGCTGATCCGGCGGGATGCCC 9142 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || ||||| || || |||| | || | ||||| | ||||| || || | Sbjct 9141 TCCTTATCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGG 9082 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || ||||| || || ||||| | ||| |||||||| Sbjct 9081 GTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 9041 >seq3723 Length=15797 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| |||| ||| | | | || || || |||||||||||||| | || || | Sbjct 4027 CGCAGCACCAGATGGAGGGTAGATTCCTTCTGAATGTTGTAGTCCGATAGTGTGCGGCCA 4086 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||| || |||| |||| |||||||| |||||||| || || || || || Sbjct 4087 TCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTTG 4146 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || ||| |||| | ||| | || || | ||||| || || | || | Sbjct 4147 TCCTGGATCTTTGCCTTCACATTTTCGATCGTGTCCGATGGCTCGACCTCAAGTGTGATG 4206 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGA 132125 || || || || || ||||| | |||||||||||||| Sbjct 4207 GTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCATGA 4243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476514912622320