Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq2 100 3e-16 >seq2 Length=295332 Score = 100 bits (110), Expect = 3e-16 Identities = 494/776 (64%), Gaps = 19/776 (2%) Strand=Plus/Minus Query 136638 CACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTT 136697 ||| || |||||||| | ||| |||| || || || | || ||| |||||||||||||| Sbjct 212078 CACCGTAAATTGGATCGCATTAACGGCCGGCTTGGTGCGCAAATAATACATGCCCGTCTT 212019 Query 136698 TAAACCCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGC 136757 || ||| ||| |||| || ||| || || | | | |||| |||| ||||| Sbjct 212018 CAATCCCATCTTCCAGCCGTAGAAATGGATCGACGTGAGCTTGCCATAGTTCGGCTCGGC 211959 Query 136758 CACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTT 136817 ||| | || | |||||| ||||| ||| | | || || || || ||||| || Sbjct 211958 TACGTGTATGTTGAACGATTGTGATTGATCAATGAATGCACCTCGATCGGCAGCCATTTT 211899 Query 136818 CAATAGTACTTTTTGCTTA-ATTTCCCAAGCGGTTTTAAAGAGCTCCTTGACATTGGGCG 136876 ||| ||||| | | |||||||| | ||||| | || || || | | Sbjct 211898 -AATGCATGTTTTTACCGAGATTTCCCACACTGTTTTGTACAGGTCACGGATCTCTTTTG 211840 Query 136877 GAATTTCATCGATATTCTGTACAGATCCGTTGTTTTT---GATGATTTTCATCAT---GA 136930 ||||| || || | || | ||||| || || |||| | ||| |||| || Sbjct 211839 GAATTGTTTCTATGCTTTGGATGGATCCATTATTGGACAAGATGTTGTTCTTCATATCGA 211780 Query 136931 GATCAGTCGAGTATACGTTGCTCTCTATGAGTTTATCGACGAGATGCTGATTTACTACTT 136990 |||| | || | | || || || | | | |||||| || || || || | Sbjct 211779 GATCCCAC-AGCCC-CATCGCAGTC----AGATCTTGCAGGAGATGATGGTTCACCACCT 211726 Query 136991 GATATTCGCCCGATAGCACTCTGCGTACGTACAGATTACTAGTGAACGGCTCGAACGATT 137050 | | |||||||| | ||| | || || | || ||| |||||||||| || | Sbjct 211725 GGAACTCGCCCGACAACACACGTCGATTATAAACGTTCGATGTGTACGGCTCGAAAGACT 211666 Query 137051 CGTTGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTAAGCGATCAACAATGAAT 137110 | ||||| ||||| || || || || | || |||||||| ||| | | ||||||| Sbjct 211665 CATTGTTGCCCAATATTTGCGCCGTTGAAGCGGTCGGCATCGGAGCCAAAAGTAATGAAT 211606 Query 137111 TCCGTAAACCGTGTACGGCCAATTGTTGCTTGAGCTCTTTCCAGTTCCACAGATTGTTCG 137170 | || | ||||| || | | || || | ||| ||||||||| |||| ||| Sbjct 211605 TACGAATTCCGTGCTTTGCTATCTTTTCTTTTAACTCGGCCCAGTTCCATAGATCCGTCG 211546 Query 137171 ATTGGGTTATATTCCACAAATCAAACTGCAAAAGTCCGCGACTTGCAGGACTTTCTGCAT 137230 || | ||||||| || |||| || | || ||| | |||||| || ||| Sbjct 211545 GTTCCTTG---TTCCACATTTCGTACTGTAATACGCCTTTGCTTACCGGACTTCCTTCAT 211489 Query 137231 AAGAATCATATGTTCCGTGCAGTTTCGCCAGTTCAATACTCTGGACTAGTGCGCCATAGT 137290 | | || || | |||| | ||| || | || |||| | || || ||||||| Sbjct 211488 ACGTCTCGTACGGACCGTCCCGTTCGGCTAACTCGCAACTCGCTTCCAGCGCACCATAGT 211429 Query 137291 AAATAGTTTCGGAGATTTTTCTATTCAATTCTCTAGCTTCTTGGCTGTCGTAGGGCATAT 137350 |||| ||||| | |||| | ||||| | | || |||| ||| ||||| || ||| Sbjct 211428 AAATGGTTTCAAATATTTGTTGATTCAGCTTTTGGGCCTCTTCGCTTTCGTACGG-ATAG 211370 Query 137351 C-CAATATAGCGAAAGCATCTGCAAGTCCTTGAATACCGATACCGATAGGTCTGTG 137405 | || || | ||| ||||| || | ||||| | |||||| || || || ||||| Sbjct 211369 CGCATTAAAATGAATGCATCGGCCATACCTTGCACACCGATTCCAATGGGCCTGTG 211314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445004479803840