Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq5733 114 2e-19 seq4839 86.0 9e-11 seq2911 86.0 9e-11 >seq5733 Length=11217 Score = 114 bits (126), Expect = 2e-19 Identities = 189/267 (71%), Gaps = 7/267 (3%) Strand=Plus/Minus Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT--CGGCGCCGACACGGTCCA 1455853 |||| || || ||||| ||||||| || |||||||| || || | |||| | | Sbjct 2972 AGGCGGAAGCTTCCTTCTGGACCGTGGAAGAGGTCGATCTATCGAAG--GACATGAAAGA 2915 Query 1455854 CTGGGTGTCGCTGAGCGACGA-CGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTC 1455912 ||||| ||||||| ||| ||| || ||||||||| |||||| || ||||| ||| Sbjct 2914 CTGGGAATCGCTGAAAC-CGAGCGAACGTCATTTCATCTCGCACGTGCTTGCCTTCTTT- 2857 Query 1455913 GCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAA 1455972 ||||| |||||| ||||| ||||||||||| | ||||| | | ||||| || Sbjct 2856 GCCGCATCCGATGGTATCGTTAACGAGAACCTGGTGGAACGCTTCAGTCAGGAGGTACAG 2797 Query 1455973 TTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAA 1456032 | | || ||||| | |||||||| || || || || || ||||| | ||| || Sbjct 2796 GTAACGGAAGCACGCTGCTTTTACGGCTTTCAAATAGCGATGGAAAATGTGCACAGCGAG 2737 Query 1456033 ACCTACTCGCTCCTGATCGACACCTAC 1456059 | |||||||| || |||||||| ||| Sbjct 2736 ATGTACTCGCTGCTAATCGACACGTAC 2710 Score = 105 bits (116), Expect = 1e-16 Identities = 135/184 (73%), Gaps = 9/184 (5%) Strand=Plus/Minus Query 1456096 GCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATC--- 1456152 ||||| || ||| |||||| || | ||| ||||| |||||||| |||| |||||| Sbjct 2586 GCCATTGAAACGTTGCCGTGCGTAAAGAAGAAGGCAGACTGGGCACTGAACTGGATCTCG 2527 Query 1456153 AACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCA 1456211 | |||| ||| | |||||| ||| || |||| | ||||| || ||||| |||| Sbjct 2526 AGCAAGAAGGCCA-----ACTTTGGCGAACGTGTCGTGGCGTTTGCGGCCGTCGAAGGCA 2472 Query 1456212 TCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCG 1456271 |||| ||| || || || |||||| || |||||||||||||| ||||| ||||| | Sbjct 2471 TCTTCTTCAGCGGTAGCTTTGCCGCCATTTTCTGGCTCAAGAAGCGTGGCCTGATGCCGG 2412 Query 1456272 GTCT 1456275 | || Sbjct 2411 GACT 2408 >seq4839 Length=15722 Score = 86.0 bits (94), Expect = 9e-11 Identities = 159/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 || ||||| ||||| |||||||| || ||| |||| |||| || ||| || Sbjct 15143 ATTTACAAAGTGCTGAAGCAGGTCCATCCCGACACCGG-----CATC-TCGTCGAAGGCC 15196 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| || |||||| ||||||||||| || |||| || || | | || || Sbjct 15197 ATGAGCATTATGAACAGCTTTGTCAACGATATCTTCGAGCGGATTGCGGCGGAAGCGTCC 15256 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || |||| | | |||||||||| |||||| | || ||||||||||| || || Sbjct 15257 CGGTTGGCCCATTACAACAAGCGCTCGACGATCACGTCCCGGGAGATCCAGACGGCGGTC 15316 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || | ||| || || ||||| | ||||||||| |||||||| |||| Sbjct 15317 CGACTACTGCTGCCGGGTGAGCTGGCAAAGCACGCCGTATCCGAGGGTACCA 15368 >seq2911 Length=16084 Score = 86.0 bits (94), Expect = 9e-11 Identities = 159/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 || ||||| ||||| |||||||| || ||| |||| |||| || ||| || Sbjct 1346 ATTTACAAAGTGCTGAAGCAGGTCCATCCCGACACCGG-----CATC-TCGTCGAAGGCC 1399 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| || |||||| ||||||||||| || |||| || || | | || || Sbjct 1400 ATGAGCATTATGAACAGCTTTGTCAACGATATCTTCGAGCGGATTGCGGCGGAAGCGTCC 1459 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || |||| | | |||||||||| |||||| | || ||||||||||| || || Sbjct 1460 CGGTTGGCCCATTACAACAAGCGCTCGACGATCACGTCCCGGGAGATCCAGACGGCGGTC 1519 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || | ||| || || ||||| | ||||||||| |||||||| |||| Sbjct 1520 CGACTACTGCTGCCGGGTGAGCTGGCAAAGCACGCCGTATCCGAGGGTACCA 1571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176252345394244