Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq48 145 7e-30 seq2169 116 3e-21 seq1402 116 3e-21 seq3723 111 1e-19 seq1141 82.4 7e-11 >seq48 Length=116589 Score = 145 bits (160), Expect = 7e-30 Identities = 163/217 (75%), Gaps = 6/217 (3%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 ||||| || || || |||||| || |||||||| |||| || || || |||| ||| Sbjct 116538 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCTTCC 116479 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 ||||||||||| || || ||||| |||||||| || | ||||| || |||||||||| | Sbjct 116478 AGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGG 116419 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGAT---TCCACCTCCACCGTGATCGTT 35704 ||||| ||||| | | | |||||| |||| || ||||||| |||||| || Sbjct 116418 ATCTTAGCCTTCACGTTCTCGATCGTGTC---CGATGGCTCGACCTCCAGCGTGATGGTC 116362 Query 35705 TTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGT 35741 || || |||| || ||||| || ||||||||||||| Sbjct 116361 TTGCCAGTCAGCGTCTTCACGAAGATCTGCATTCTGT 116325 >seq2169 Length=21917 Score = 116 bits (128), Expect = 3e-21 Identities = 200/288 (69%), Gaps = 2/288 (1%) Strand=Plus/Plus Query 44103 CTAGAGACGGCCTCCACCCATGATCCTTTGTGGAACGCTGCCCAAACACAACTGTTGCGA 44162 || ||||||||| || || || | |||||||| | ||||| || || |||| Sbjct 3659 CTGGAGACGGCCAAAACGCACGACGATCTGTGGAACTCGGCCCAGCTGCAGATGGTGCGG 3718 Query 44163 GAAGGTAAAATGCACCAATACATGCGTATGTATTGGTGCAAGAAGATATTGGAGTGGTCG 44222 ||||| || |||||| | |||| ||||| ||| ||||||||| |||||||| || Sbjct 3719 GAAGGCAAGATGCACGGCTTTCTGCGGATGTACTGGGCGAAGAAGATACTGGAGTGGACG 3778 Query 44223 GAAGATGCGCAAACCGCGCTCGTTCATGCCATCTATCTGAACGACAAGTACAGTTTGGAC 44282 || || | ||||||| || |||||||||||||| |||||| |||| Sbjct 3779 AAAACACCGGAGGAGGCGCTCGAGACGGCGATCTATCTGAACGATCGGTACAGCCTGGAT 3838 Query 44283 GGTCGCGACCCCAACGGGTACGTAGGATGTATGTGGTCCATTTGCGGTGTCCACGA-CAG 44341 || ||||| || ||||||||||| || || |||||||| || || | ||||| ||| Sbjct 3839 GGGCGCGATCCGAACGGGTACGTCGGGTGCATGTGGTCGATCGCGGGAATACACGATCAG 3898 Query 44342 GGCGTGGCGAGAGCTACCCATCTACGGCAAAGTGCGCTACATGAACTA 44389 || ||| |||| || | |||||| | || ||||||||||| Sbjct 3899 GG-ATGGAAGGAGCGGGAAATTTTTGGCAAAATTCGTTACATGAACTA 3945 >seq1402 Length=30251 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| |||| || || || |||| |||||||||||||| ||||| Sbjct 9232 CTCCTTCTGAATGTTGTAGTCGGACAGTGTGCGACCGTCCTCCAGCTGCTTACCGGCAAA 9173 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| |||||||| |||| || | || |||||| ||| |||||| ||||| | | Sbjct 9172 GATCAGACGCTGCTGATCCGGCGGGATGCCCTCCTTATCCTGGATCTTCGCCTTCACATT 9113 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||| || | || ||||| | || || || |||||||| | ||||| || Sbjct 9112 CTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGAC 9053 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 9052 GAAGATCTGCAT 9041 >seq3723 Length=15797 Score = 111 bits (122), Expect = 1e-19 Identities = 165/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 35507 TTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCG 35566 || |||||||| | | || ||||| ||| | ||| ||||| ||||||||||| || Sbjct 4012 TTACCACCACGGAGTCGCAGCACCAGATGGAGGGTAGATTCCTTCTGAATGTTGTAGTCC 4071 Query 35567 GCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAA 35626 | | || || | || ||||||||||| || || || || | |||||||| || | Sbjct 4072 GATAGTGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGG 4131 Query 35627 GGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGAT--- 35683 || | | |||||||||| ||||||| ||||| | || | | |||||| |||| Sbjct 4132 GGGATTCCCTCCTTGTCCTGGATCTTTGCCTTCACATTTTCGATCGTGTC---CGATGGC 4188 Query 35684 TCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || ||||| | ||||| || || || || | |||||||| || |||||||| Sbjct 4189 TCGACCTCAAGTGTGATGGTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCAT 4241 >seq1141 Length=30375 Score = 82.4 bits (90), Expect = 7e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 ||||| || || || |||||| || |||||||| |||| || || || |||| ||| Sbjct 30272 ACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCTTCC 30331 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAA 35630 ||||||||||| || || ||||| |||||||| || | ||||| Sbjct 30332 AGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAA 30374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450702528422960