Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq2 174 2e-38 seq1402 129 6e-25 seq3723 118 1e-21 seq5733 105 7e-18 seq48 86.0 6e-12 >seq2 Length=295332 Score = 174 bits (192), Expect = 2e-38 Identities = 1183/1880 (63%), Gaps = 68/1880 (4%) Strand=Plus/Plus Query 7472 ACGAGCGCGATTACGATTACCGTTATTTTGCCGTAAAAACTTTAAAAAACGG--CTACTT 7529 |||| ||||||| | ||| || |||| | ||||| || || ||| ||| || Sbjct 210232 ACGATCGCGATTTTGGATACAACTACTTTGGGTTCAAAACATTGGAA--CGGTCCTATTT 210289 Query 7530 GTTGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGTGGCGGT 7589 |||||| ||||| || | | ||||| || |||||| || ||||||| ||| | Sbjct 210290 GTTGAAGATCAAGGGTAAGATTGTTGAACGTCCGCAGCACATGTTGATGCGCGTTGCGAT 210349 Query 7590 GGGCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTCTTTGAA 7649 || || || || |||||||| || || ||| | || || ||| | || | || | Sbjct 210350 CGGTATACATGGTGAAGACATCGATGCAGCCATCGAGACATACAACTTGCTTTCGGAGCG 210409 Query 7650 ACAGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCAC-AAACGCGCCTCAATTGT 7708 | ||||| || || || || ||||||||||| || | || |||| || || ||| Sbjct 210410 TTATTTTACCCATGCCTCACCGACCATGTTTGCGGCAGCTACGCAACG-TCCACAGCTGT 210468 Query 7709 CCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACACGCTGC 7768 | || |||||| ||||||||||| || || || || || || || || | ||||| Sbjct 210469 CATCTTGTTTTCTGCTAACCATGTCTGACGATAGTATTGAAGGTATCTATGATACGCTAA 210528 Query 7769 GCGATTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGACGTGC 7828 | || || ||||| |||| | |||||||| || ||||| || || | | Sbjct 210529 AGCAGTGTGCGCTGATTTCAAAATCAGCAGGCGGAATTGGGCTGAATGTTCACTGTATTC 210588 Query 7829 GCGCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGT 7888 |||| || || | |||| ||| ||||| | | | ||| || | || ||| Sbjct 210589 GCGCGAAGGGAACGTACATCTCAGGCACGAACGGGATTTCGAACGGGTTGGTACCGATGC 210648 Query 7889 TGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGGAAAGCGCAAA------G 7942 |||| |||| ||| ||| | | ||| |||| || ||||| || || |||| | Sbjct 210649 TGCGAGTGTACAACAACACAGCCCGATATGTGGATCAGGGTGGCAA---CAAACGACCGG 210705 Query 7943 GCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAATCTGC 8002 | || |||||| || | || || ||||| | || | | || | || ||||| Sbjct 210706 GAGCTTTTGCCATATACCTCGAACCATGGCATGGTGATGTATTCGAGTTTCTGGATCTGA 210765 Query 8003 GTCGCAACATGGGTTGCGAAGACAGCAAAGCGCGCGATCTATTCTTCGGATTGTGGGTGC 8062 |||| || || || || || || | |||| || |||||| | | Sbjct 210766 AGAAAAACACCGGCAAGGAGGAGGTGCGTGCACGTGACATGTTCTACGCTTTGTGGATAC 210825 Query 8063 CCGATCTGTTTATGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCCCCGATC 8122 | ||||||||||||| || || | ||| | ||| || |||||||| | Sbjct 210826 CGGATCTGTTTATGAAACGGGTAGAGGCTAACGAAATGTGGAGTCTGATGTGCCCTCACG 210885 Query 8123 GTTGCCCTTTATT--AAAAAACGTTTACGGTTCAAAATTTGAACAATTGTACAAACAATA 8180 ||| ||| || |||| || ||| | | || || | |||||| | || Sbjct 210886 ATTGTCCTGGGTTGGCGGAAAC--TTGGGGTGAAGAGTTCGAGACACTGTACACGCGTTA 210943 Query 8181 CGAACACGACGGCGCGTACGTGCGGCAAGTGAAAGCGCGCGACCTGCACCGCGCCATTAT 8240 ||| | || || | | | || ||||| | || | || || || || || Sbjct 210944 CGAGAAGGAGGGACGATTCATTCGACAAGTAAGGGCACAGGATTTGTGGTATGCAATCAT 211003 Query 8241 CGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGCCAA 8300 |||| || ||||| || | ||||| ||||||||||| || || ||||| || Sbjct 211004 TGAATCGCAGGTGGAAACGGGCGTACCGTATATGCTGTACAAGGATGCATGCAATCGTAA 211063 Query 8301 AAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTACA 8360 |||||||||| || || |||||||| ||| || ||||| | || |||||| | Sbjct 211064 AAGCAATCAACAGAATGTTGGCACCATAAAGTGCTCTAACTTGTGCACAGAGATTGTAGA 211123 Query 8361 GTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGTGTTTAAACGCGTT 8420 |||| || |||||| | || || || ||||| || ||| | ||||| ||| Sbjct 211124 GTACTCATCGAAAGACGAAATTGCAGTGTGTAATCTGGCTTCGATCGCCCTAAACATGTT 211183 Query 8421 CGTTGATCGACGCTCAAACACTTACGACTTTGAACAATT---GAAAAACGCCGTGCAAGT 8477 ||| | ||| | || |||||||| |||| | | | | || ||| | || Sbjct 211184 CGT--AAAGACAGAC-AAGACTTACGATTTTGTAAAGCTTAAGGAAGTCGCTAAGATTGT 211240 Query 8478 GACGGTACGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTT---GGA--AGAA 8532 |||| |||||| | | || || ||| |||| | ||||| | ||| ||| Sbjct 211241 GACG---CGCAATCTGAACAAAATAATCGATATCAACTACTATCCAGTACCGGAGGCGAA 211297 Query 8533 GCGCGCGTATCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCGAC 8592 |||| || |||||||||||||| ||| |||| | || ||||||||| ||||||| Sbjct 211298 GCGC-----TCTAACATGCGCCACAGGCCCATTGGAATCGGTGTGCAAGGTATGGCCGAT 211352 Query 8593 GCGTTTGCCATGT---TGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACATA 8649 || || ||| | ||||| || ||||||||| |||| || | | ||| || | Sbjct 211353 GCATT---CATTTTAATGCGCTATCCGTACGAAAGCGAAGAGGCCCAAAAGCTGAATCAA 211409 Query 8650 AAAATAGCGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGCCCGAGAA 8709 ||||| ||||| | || || || || | ||||| || || | | || |||| | Sbjct 211410 CAAATATTTGAAACCATTTACTATGGTGCGCTGGAAGCGAGTTG-CGAGTTAGCCGA-AC 211467 Query 8710 TTG--GGCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACG 8767 | || ||||||| |||| | || || || | ||| || |||| || |||| Sbjct 211468 GGGACGGTCCGTACGAGACGTATGAAGGAAGTCCGGTAAGCAAAGGCGTATTACAGTACG 211527 Query 8768 ACATGTGGAATGTCACG---CCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGCAAAA 8824 | |||||||| || | || || | | ||||| ||| ||| || ||| || | Sbjct 211528 AAATGTGGAA---CAAGGAACCGACGGATCTATGGAACTGGGCCGAGTTAAAAGAAAAGA 211584 Query 8825 TTGCTCAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTG 8884 | || | ||| | || ||||| | | ||||| ||||| ||||| | || | Sbjct 211585 TAGCAAAGCACGGAATTCGTAATTCATTACTTTTGGCTCCGATGCCGACCGCTTCAACGG 211644 Query 8885 CTCAAATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTACGTGAGAC 8944 | |||||| |||| ||||| || || || ||||||| ||| ||||| || ||| Sbjct 211645 CGCAAATATTGGGCAACAATGAGTCTTTCGAGCCGTACACATCGAACGTTTATAATCGAC 211704 Query 8945 GAGTGTTGGCCGGCGATTTTTTAATGCTGAATCGTCATTTGATGCGCGACTTGA--TCGA 9002 | |||||| | ||||| || || |||| | |||| | ||| || ||| ||| Sbjct 211705 GTGTGTTGTCGGGCGAGTTCCAGGTGGTGAACCATCATCTCCTGCAAGATCTGACTGCGA 211764 Query 9003 AGCGGGCGTTTACGACGACAAAATGCGCGATGCCATCGTGGAAGCCAACGGCAGCGTTCA 9062 | |||| | | || | | ||| | |||| || || || | | || Sbjct 211765 TG-GGGC-TGTGGGATCTCGATATGAAGAACAACATCTTGTCCAATAATGGATCCATCCA 211822 Query 9063 GAACATTGACGCGGTGCCTCAACACATTAAAGAGCTGTATAAAACCGTTTGGGAAATGAA 9122 | ||| || | | || || | || || ||||| ||||| || |||||||| Sbjct 211823 AAGCATAGAAACAATTCCAAAAGAGATCCGTGACCTGTACAAAACAGTGTGGGAAATCTC 211882 Query 9123 G--CAAAGCACGCTGATCGGCATGGCTGCGGATAGAGGCGCTTTTATTGATCAGAGTCAA 9180 | ||| || || || |||||||| ||| |||| || || |||||||| ||| Sbjct 211883 GGTAAAAACATGC--ATTAAAATGGCTGCCGATCGAGGTGCATTCATTGATCAATCACAA 211940 Query 9181 TCTTTTAACGTGTTCGTAGCCGCACC-AACTTACGC--TTTGATGTCCAGCATTCATTAT 9237 || || ||| | |||||||| || |||| || | | ||| || |||| Sbjct 211941 TCGTTCAACATACACGTAGCCGAGCCGAACTATGGCAAGCTCACGTC---GATCCATTTC 211997 Query 9238 TTAACTTGGAAAATGGGTTTAAAAACAGGCATGTACTATTTGCGCACAAAACCCGCCGCT 9297 | ||||| ||||| || || || |||||||| ||||||||||| || || |||| | Sbjct 211998 TACGGCTGGAAGATGGGATTGAAGACGGGCATGTATTATTTGCGCACCAAGCCGGCCGTT 212057 Query 9298 GAACCTATCAAATTTACAGT 9317 | | ||| ||||||| || Sbjct 212058 AATGCGATCCAATTTACGGT 212077 >seq1402 Length=30251 Score = 129 bits (142), Expect = 6e-25 Identities = 164/224 (73%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| || ||||| ||||| ||||||||||||||| || ||||| Sbjct 9258 AGGCGAAGCACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGG--ACAGTGTGC 9201 Query 134556 GA--GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTT 134613 || ||| || ||||| || || ||||| |||| |||||||||||| ||||| ||||| | Sbjct 9200 GACCGTCCTCCAGCTGCTTACCGGCAAAGATCAGACGCTGCTGATCCGGCGGGATGCCCT 9141 Query 134614 CTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAG 134673 | || || || || || || || || | || || || | || || || || | Sbjct 9140 CCTTATCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGG 9081 Query 134674 TAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||||| ||||| || | ||||| ||||| || ||||| ||| Sbjct 9080 TAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTG 9037 >seq3723 Length=15797 Score = 118 bits (130), Expect = 1e-21 Identities = 167/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 134483 CTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC 134542 ||| || || | |||||||| ||| || || || || |||||||| |||||||||||||| Sbjct 4011 CTTACCACCACGGAGTCGCAGCACCAGATGGAGGGTAGATTCCTTCTGAATGTTGTAGTC 4070 Query 134543 GCCAACGGTGTGAGAG--TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCG 134600 | | ||||| | || || ||||| ||||| || || || | |||||||||||| Sbjct 4071 --CGATAGTGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCT 4128 Query 134601 GGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGAT 134660 || || || || || || || || || ||| || || || | ||||| || | Sbjct 4129 GGGGGGATTCCCTCCTTGTCCTGGATCTTTGCCTTCACATTTTCGATCGTGTCCGATGGC 4188 Query 134661 TCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || ||||| || ||||| | ||||| |||||||| ||||| Sbjct 4189 TCGACCTCAAGTGTGATGGTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCAT 4241 >seq5733 Length=11217 Score = 105 bits (116), Expect = 7e-18 Identities = 235/345 (68%), Gaps = 21/345 (6%) Strand=Plus/Plus Query 21528 CAATTCCACGCA-CAAACGATCCGCCACGAATTCAATGTATTGACACATGCTGTCGCAAT 21586 ||| |||| ||| ||||||||| |||||||| |||||||| || |||| ||||||| Sbjct 2167 CAACTCCA-GCAGCAAACGATCGGCCACGAACTCAATGTACTGCGACATCAGATCGCAAT 2225 Query 21587 TCATGCCCAACAGATCGACCGGTAGCGCTTCGGTGAAAAACTCCTTCTCGATAGCCACCG 21646 |||| || | || |||||||| || |||| || ||||| || | |||||| | |||| Sbjct 2226 TCATACCGAGCATGTCGACCGGCAGGGCTTTCGTCAAAAATTCTTGCTCGATCACAACCG 2285 Query 21647 CTTCCTTGATCATGGCGTGTATTTCACCGGCGGACAATTTGTCTT-GAGGCTCGATGTA- 21704 | | | || ||| ||| |||| ||| | ||| |||| | |||| Sbjct 2286 CAT-CACGA--ATG--ATGTCCGTCAC--GCGCTC-------CTTCGAGGGTTTCTGTAC 2331 Query 21705 ---TTTGTTGTAGTAGAGACAAGCAAAATTGGTGTGCAATCCCTCGTCGCGCGAAATCAA 21761 | ||| | || || ||||| | | ||||| ||| |||||||||||||||| Sbjct 2332 CAGGTACTTGAACATCAGGCAGGCAAAGTCGCAGTGCAGTCCTTCGTCGCGCGAAATCAG 2391 Query 21762 TTCGTTGCTGAACGTGAGACCGGGCATTAAACCTCGATTTTTAATGTAAAAAATTGCCGC 21821 ||||| |||||| || || ||||| | || || || || | | ||||| || || Sbjct 2392 CTCGTTCGAGAACGTCAGTCCCGGCATCAGGCCACGCTTCTTGAGCCAGAAAATGGCGGC 2451 Query 21822 AAAGCTACCGGaaaaaaaCACGCCCTCCACAATGGCGAACGCCAC 21866 |||||||||| || || | ||| || || || |||||||| Sbjct 2452 AAAGCTACCGCTGAAGAAGATGCCTTCGACGGCCGCAAACGCCAC 2496 >seq48 Length=116589 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCT 134576 || || ||||| || |||||||||||| | || | ||| || ||||| || || Sbjct 116526 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCTTCCAGCTGCTTACCG 116467 Query 134577 GCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTG 134636 || || ||||||||||||||||| || || ||||| || || || || || || || Sbjct 116466 GCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTC 116407 Query 134637 ACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTT 134696 || || | ||||| || | || || || || || ||||| || || || | || Sbjct 116406 ACGTTCTCGATCGTGTCCGATGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTCAGCGTC 116347 Query 134697 TTAACGAAAATTTGCATTTTGT 134718 || ||||| || |||||| ||| Sbjct 116346 TTCACGAAGATCTGCATTCTGT 116325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505296296888240