Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2 470 2e-127 seq5733 118 1e-21 >seq2 Length=295332 Score = 470 bits (520), Expect = 2e-127 Identities = 1227/1854 (66%), Gaps = 32/1854 (2%) Strand=Plus/Minus Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454 || || || || || | ||| ||||| || || |||| || | |||| ||||||||| Sbjct 212053 GCCGGCTTGGTGCGCAAATAATACATGCCCGTCTTCAATCCCATCTTCCAGCCGTAGAAA 211994 Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTT 68514 || || || || ||| ||| | || ||||||| || || || | |||||| | Sbjct 211993 TGGATCGACGTGAGCTTGCCATAGTTCGGCTCGGCTACGTGTATGTTGAACGATTGTGAT 211934 Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATAC-TCTTTTGAG-GA-ATT 68571 ||||| ||||| || |||| ||| || |||||||| ||| | | |||| | || ||| Sbjct 211933 TGATCAATGAATGCACCTCGATCGGCAGCCATTTT---AATGCATGTTTTTACCGAGATT 211877 Query 68572 TCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAG-GCTCGTAT--TTTGAATG 68628 ||||| | || || | | | ||| || | ||||| | | ||| |||| ||| Sbjct 211876 TCCCACACTGTTTTGTACAGGTCACGGATCTCTTTTGGAATTGTTTCTATGCTTTGGATG 211817 Query 68629 GATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTT 68688 |||||| || ||| | || | ||||| || || || ||||| || | || Sbjct 211816 GATCCATTATTGGACAAGATGTTGTTCTTCATATCGAGATCCCACAGCCCCATCGCAGTC 211757 Query 68689 AAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTG 68748 | | || |||||||| | || || | || || || || || ||||| | ||| | Sbjct 211756 AGATCTTGCAGGAGATGATGGTTCACCACCTGGAACTCGCCCGACAACACACGTCGATTA 211697 Query 68749 TAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGAT 68808 |||| || || || || || | ||| ||||| || |||| ||||| || ||||| Sbjct 211696 TAAACGTTCGATGTGTACGGCTCGAAAGACTCATTGTTGCCCAATATTTGCGCCGTTGAA 211637 Query 68809 GCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCT 68868 || || ||||| || |||| | ||| ||| | || || || || || || ||| Sbjct 211636 GCGGTCGGCATCGGAGCCAAAAGTAATGAATTACGAATTCCGTGCTTTGCTATCTTTTCT 211577 Query 68869 TTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGA 68928 |||| | ||| | ||| ||||| | ||| | ||||| | ||||| |||| Sbjct 211576 TTTAACTCGGCCCAGTTCCATAGATCCGTCGGTTCCTTGTTCCACATTTCGTACTGTAAT 211517 Query 68929 ATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGT 68988 | || || ||| | ||| | ||| || || || || || ||| |||| |||| Sbjct 211516 ACGCCTTTGCTTACCGGACTTCCTTCATACGTCTCGTACGGACCGTCCCGTTCGGCTAAC 211457 Query 68989 TCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCT 69048 || ||||| || || | ||||| || ||||| ||||| || || | | ||| || | | Sbjct 211456 TCGCAACTCGCTTCCAGCGCACCATAGTAAATGGTTTCAAATATTTGTTGATTCAGCTTT 211397 Query 69049 TGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGA 69108 || || ||| || ||| | ||||| | | | ||| |||||||| |||| || || Sbjct 211396 TGGGCCTCTTCGCTTTCGTACGGATAGCGCATTAAAATGAATGCATCGGCCATACCTTGC 211337 Query 69109 ACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAA 69168 || || || || || || || || | | | || || | | || || || | ||||| Sbjct 211336 ACACCGATTCCAATGGGCCTGTGGCGCATGTTAGAGCGCTTCGCCTCCGGTACTGGATAG 211277 Query 69169 TAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGT 69228 || || ||||| || ||||| || ||||| || || | ||| | || ||||| || Sbjct 211276 TAGTTGATATCGATTATTTTGTTCAGATTGCGCGTCACAATCTTAGCGACTTCCTTAAGC 211217 Query 69229 TTGAGAAAATC--AAATC--GTCCATCTATAACAAACATATTCAGTGCTACAGATGCTAG 69284 || | |||||| || || ||| ||| || | ||||| || || || | || || || Sbjct 211216 TTTACAAAATCGTAAGTCTTGTCTGTCTTTA-CGAACATGTTTAGGGCGATCGAAGCCAG 211158 Query 69285 ATTACAAACTGCTA---CCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATT 69341 |||||| ||||| | | || || || || || | || |||||||| || | || Sbjct 211157 ATTACACACTGCAATTTCGTCTTTCGA---TGAGTACTCTACAATCTCTGTGCACAAGTT 211101 Query 69342 ACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTA 69401 | || || || || || | ||| || ||||| || || || || || |||||||| Sbjct 211100 AGAGCACTTTATGGTGCCAACATTCTGTTGATTGCTTTTACGATTGCATGCATCCTTGTA 211041 Query 69402 AAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCT 69461 || ||| |||| || ||||| | ||| ||||| || || | | ||| | || Sbjct 211040 CAGCATATACGGTACGCCCGTTTCCACCTGCGATTCAATGATTGCATACCACAAATCCTG 210981 Query 69462 AGCATTTATTACGGTCT--TGTAACGCTTCTCTTTTTCATATTGTGTATATAGCCGTTCG 69519 || ||| | ||| || | || ||| || || || | || || || ||| Sbjct 210980 TGCCCTTACTT--GTCGAATGAATCGTCCCTCCTTCTCGTAACGCGTGTACAGTGTCTCG 210923 Query 69520 AATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCAC 69579 || || || |||||| || |||| |||||||| || | || ||||||| |||| Sbjct 210922 AACTCTTCACCCCAAGTTTCCGCCAACCCAGGACAATCGTGAGGGCACATCAGACTCCAC 210863 Query 69580 ACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGA 69639 | || | | ||| || ||||||||||| ||||| || ||||| | ||| || | Sbjct 210862 ATTTCGTTAGCCTCTACCCGTTTCATAAACAGATCCGGTATCCACAAAGCGTAGAACATG 210803 Query 69640 TCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATA 69699 || | | | || || || || || ||||| || ||||| |||||||| | | | Sbjct 210802 TCACGTGCACGCACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCGAATACA 210743 Query 69700 TCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGA 69759 ||| |||||||||||| || ||||| || | ||||||||||||| || || |||||| Sbjct 210742 TCACCATGCCATGGTTCGAGGTATATGGCAAAAGCTCCCGGTCGTTTGTTGCCACCCTGA 210683 Query 69760 TCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTA 69819 || | |||| ||| ||||| || || |||| ||||||||| | | || || || | Sbjct 210682 TCCACATATCGGGCTGTGTTGTTGTACACTCGCAGCATCGGTACCAACCCGTTCGAAATC 210623 Query 69820 CCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATT 69879 || || || || || || || |||| | ||||||||| || | || || ||| Sbjct 210622 CCGTTCGTGCCTGAGATGTACGTTCCCTTCGCGCGAATACAGTGAACATTCAGCCCAATT 210563 Query 69880 CCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATG 69939 || ||||| ||| || || || ||||| | || | || ||||| ||||| || || Sbjct 210562 CCGCCTGCTGATTTTGAAATCAGCGCACACTGCTTTAGCGTATCATAGATACCTTCAATA 210503 Query 69940 CTATCATCTATCATGTTAAGAAGAAAACAGCTAGACA---TTTGATGATGTATAGTTCCC 69996 ||||| || |||| | || |||||||| |||| | || | || ||| | || Sbjct 210502 CTATCGTCAGACATGGTTAGCAGAAAACAAGATGACAGCTGTGGACGTTGCGTAGCTGCC 210443 Query 69997 GCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTT 70056 || ||| | || || || || || || || | || ||||||| |||||||| Sbjct 210442 GC---AAACATGGTCGGTGAGGCATGGGTAAAATAACGCTCCGAAAGCAAGTTGTATGTC 210386 Query 70057 TCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAACATATG 70115 || || |||| || || || ||| ||| || || ||||| || ||||||||||| || Sbjct 210385 TCGATGGCTGCATCGATGTCTTCAC-CATGTATACCGATCGCAACGCGCATCAACATGTG 210327 Query 70116 CTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTT 70175 ||| || ||||| || | ||| || || ||||||| || || ||||| ||||| Sbjct 210326 CTGCGGACGTTCAACAATCTTACCCTTGATCTTCAACAAATAGGACCGTTCCAATGTTTT 210267 Query 70176 AAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAG 70229 |||||||| ||||||||| ||| || | |||||||| || | ||||| || Sbjct 210266 GAACCCAAAGTAGTTGTATCCAAAATCGCGATCGTAAATGATGGCCGAATTCAG 210213 >seq5733 Length=11217 Score = 118 bits (130), Expect = 1e-21 Identities = 182/258 (71%), Gaps = 5/258 (2%) Strand=Plus/Plus Query 39605 TTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTA 39664 || ||||| | |||||| ||||| || || || || || || | ||| | ||||| Sbjct 2339 TTGAACATCAGGCAGGCAAAGTCGCAGTGCAGTCCTTCGTCGCGCGAAATCAGCTCGTTC 2398 Query 39665 GAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT 39724 || || || ||||| ||||| || |||||||| |||||||| || ||||| ||||| Sbjct 2399 GAGAACGTCAGTCCCGGCATCAGGCCACGCTTCTTGAGCCAGAAAATGGCGGCAAAGCTA 2458 Query 39725 CCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTG-- 39782 || |||||||||||||| || || ||||| || || | | || || || ||| Sbjct 2459 CCGCTGAAGAAGATGCCTTCGACGGCCGCAAACGCCACGACACGTTCGCC-AAAGTTGGC 2517 Query 39783 --TATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGT 39840 | | | ||||| ||| ||||||| || || ||||||||||| || |||| || Sbjct 2518 CTTCTTGCTCGAGATCCAGTTCAGTGCCCAGTCTGCCTTCTTCTTTACGCACGGCAACGT 2577 Query 39841 TTCTATAGCATTAAAGAG 39858 ||| || ||||| || || Sbjct 2578 TTCAATGGCATTGAACAG 2595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686770027249680