Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq2 237 1e-57 seq1402 105 6e-18 seq3723 98.7 8e-16 >seq2 Length=295332 Score = 237 bits (262), Expect = 1e-57 Identities = 1055/1648 (64%), Gaps = 47/1648 (3%) Strand=Plus/Minus Query 130406 TTTTCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCT 130465 || || || || ||||| || ||||| |||||||||||||||||||||||||||||| Sbjct 212083 TTGTCCACCGTAAATTGGATCGCATTAACGGCCGGCTTGGTGCGCAAATAATACATGCCC 212024 Query 130466 GTTTTGAGTCCAATTTTGTGTCCATAATTGTGGATGCTGCACATT-GTTTGG--TAATTG 130522 || || | ||| || || || || ||||| || | | ||| || || Sbjct 212023 GTCTTCAATCCCATCTTCCAGCCGTAGAAATGGATCG---ACGTGAGCTTGCCATAGTTC 211967 Query 130523 GGTTGCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCA 130582 || | || ||| |||||||| |||||| ||||||||||| || || || | || ||| Sbjct 211966 GGCTCGGCTACGTGTATGTTGAACGATTGTGATTGATCAATGAATGCACCTCGATCGGCA 211907 Query 130583 GCCATGTCGA-GCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAAT 130641 ||||| | | ||||| ||||| || ||||| | || ||||| || || | || Sbjct 211906 GCCATTTTAATGCATGTTTTTACCGAG-ATTTCCCACACTGTTTTGTACAGGTCACGGAT 211848 Query 130642 GTGTTTGGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTTGCG 130701 | ||| || || | || ||| | | || || |||| | || | ||| Sbjct 211847 CTCTTTTGGAATTGTTTCTATGCTTTGGATGGATCCATTATTGGACAAGATGTTGTTCTT 211788 Query 130702 CATACTTTTATCGTACAATCCAA--GCTGTACAAGATCTTTTACCAAATGATTATTAATG 130759 |||| ||| ||| || | || || ||||||| | | ||||| || | Sbjct 211787 CATATCGAGATCCCACAGCCCCATCGCAGTC--AGATCTTGCAGGAGATGATGGTTCACC 211730 Query 130760 ATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAG 130819 | || || || || | || || |||| | |||| ||| ||| |||| || || Sbjct 211729 ACCTGGAACTCGCCCGACAACACACGTCGATTATAAACGTTCGATGTGTACGGCTCGAAA 211670 Query 130820 GATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGA 130879 || || |||||||| |||||||| || || | ||||| ||||| |||| | || Sbjct 211669 GACTCATTGTTGCCCAATATTTGCGCCGTTGAAGCGGTCGGCATCGGAGCCAAAAGTAAT 211610 Query 130880 GAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAG 130939 |||||||||| |||||| | | || ||| || || || |||| | ||||||| Sbjct 211609 GAATTACGAATTCCGTGCTTTGCTATCTTTTCTTTTAACTCGGCCCAGTTCCATAGATCC 211550 Query 130940 GTAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGGAT 130999 || |||| | ||||||||||| || | |||| || |||||| || | ||||| | Sbjct 211549 GTCGGTT---CCTTGTTCCACATTTCGTACTGTAATACGCCTTTGCTTACCGGACTTCCT 211493 Query 131000 TCGAACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCCG 131059 || ||| ||||| || || || | ||| || ||||||| || || Sbjct 211492 TCATACGTCTCGTACGGACCGTCCCGTTCGGCTAACTCGCAACTCGCTTCCAGCGCACCA 211433 Query 131060 TAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAAGGA 131119 || ||||||||||| ||||||| ||| | | || || | | ||| ||||| ||| Sbjct 211432 TAGTAAATGGTTTCAAATATTTGTTGATTCAGCTTTTGGGCCTCTTCGCTTTCGTACGGA 211373 Query 131120 AATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCTATGT 131179 | ||||||||| || || || || | ||| || | || | || | || || || Sbjct 211372 TAGCGCATTAAAATGAATGCATCGGCCATACCTTGCACACCGATTCCAATGGGCCTGTGG 211313 Query 131180 TTTAAATTACATTTACGCGAACATTCGGTG--GGATAAAGGTTAATGTCAATTATTTTGT 131237 | ||| | || | | |||| ||||| ||| || || |||||||||| Sbjct 211312 CGCATGTTAGAGCGCTTCG--CCTCCGGTACTGGATAGTAGTTGATATCGATTATTTTGT 211255 Query 131238 TTAAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACGTGCCAG 131297 | | ||||||| ||||| | | ||| || | || | ||||| | || Sbjct 211254 TCAGATTGCGCGTCACAATCTTAGCGACTTCCTTAAGCTTTACAAAATCGTAAGTCT--- 211198 Query 131298 TTTCGAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGTTTCGT 131357 | || ||||| || |||| || || ||||||||||| ||||| |||||| Sbjct 211197 TGTCTGTCTTTACGAACATGTTTAGGGCGATCGAAGCCAGATTACACACTGCAATTTCGT 211138 Query 131358 CATAATCGC--AATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCAA 131415 | | ||| | |||| ||||| || | |||||| ||| || |||||||||||| | Sbjct 211137 CTT--TCGATGAGTACTCTACAATCTCTGTGCACAAGTTAGAGCACTTTATGGTGCCAAC 211080 Query 131416 ATTTTGTTGATTGCTTTTAGCATTCACATG-GTCCTTGTACATCATGTAGGGCGTGCCCG 131474 ||| ||||||||||||||| ||| |||| |||||||||| ||| || || ||||| Sbjct 211079 ATTCTGTTGATTGCTTTTACGATT-GCATGCATCCTTGTACAGCATATACGGTACGCCCG 211021 Query 131475 TTTCGACTTGAGTTTCAAT-AATGTATCGAAAGAGTTTTCGAGCAGACAATTGATATTTG 131533 |||| || || | |||||| | || || | | | | | || | ||| || Sbjct 211020 TTTCCACCTGCGATTCAATGATTGCATACCACAAATCCT-GTGCCCTTACTTGTCGAATG 210962 Query 131534 TATTGGCCGCGTTTTTCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCCAAACGAACTG 131593 || | || || |||||| ||||| || || || | || || | || | Sbjct 210961 AATCGTCCCTCCTTCTCGTAACGCGTGTACAGTGTCTCGAACTCTT---CACCCCAAGTT 210905 Query 131594 T---CCAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACT 131650 | |||| ||||| ||| || ||||| || ||||| |||| || || Sbjct 210904 TCCGCCAACCCAGGACAATCGTGAGGGCACATCAGACTCCACATTTCGTTAGCCTCTACC 210845 Query 131651 CGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCT 131710 || |||||||||| |||||| | ||| || ||||| |||| || | || ||| Sbjct 210844 CGTTTCATAAACAGATCCGGTATCCACAAAGCGTAGAACATGTCACGTGCACGCACCTCC 210785 Query 131711 TCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCC 131770 || | || | |||| |||| || | ||| || || | || ||||||| ||||| Sbjct 210784 TCCTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCGAATACATCACCATGCCATGGTTCG 210725 Query 131771 AAATACACTGCCATTGCGCC------TTTGCGCTTACCGCCTTGATTAACATGACGAACC 131824 | || | || | || || |||| || || || |||| |||| || | Sbjct 210724 AGGTATATGGCAAAAGCTCCCGGTCGTTTG---TTGCCACCCTGATCCACATATCGGGCT 210668 Query 131825 ATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTA 131884 |||||||||| || |||| ||| || |||| ||||| | | || || |||| || | Sbjct 210667 GTGTTGTTGTACACTCGCAGCATCGGTACCAACCCGTTCGAAATCCCGTTCGTGC-CTGA 210609 Query 131885 -ATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTT 131943 ||||| | || || || | || |||||| || || ||||| || || | |||| Sbjct 210608 GATGTACGTTCCCTTCGCGCGAATACAGTGAACATTCAGCCCAATTCCGCCTGCTGATTT 210549 Query 131944 AGAGATTAGTGCGCATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAAT 132003 || || || || || | |||| || | |||||||||||| | || || | | || Sbjct 210548 TGAAATCAGCGCACACTGCTTTAGCGTATCATAGATACCTTCAATACTATCGTCAGACAT 210489 Query 132004 GTCGACTAAAAAGCAAGAGGACAACTGT 132031 | | | ||| ||||| |||| |||| Sbjct 210488 GGTTAGCAGAAAACAAGATGACAGCTGT 210461 >seq1402 Length=30251 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||||| || | |||| || | || || || || ||||| ||||||||| Sbjct 9268 GCCACCGCGCAGGCGAAGCACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGA 9209 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 || |||| |||| || ||||| |||||||| | || |||||||| ||||||||||| Sbjct 9208 CAGTGTGCGACCGTCCTCCAGCTGCTTACCGGCAAAGATCAGACGCTGCTGATCCGGCGG 9149 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| ||||| |||||| |||| | || | || || | || || || Sbjct 9148 GATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGAC 9089 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | || ||||| || ||||| || ||||| ||||| Sbjct 9088 CTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 9041 >seq3723 Length=15797 Score = 98.7 bits (108), Expect = 8e-16 Identities = 155/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTC 27091 |||| |||| ||| | ||||| || || ||||| |||||||| | | ||| ||| | Sbjct 4027 CGCAGCACCAGATGGAGGGTAGATTCCTTCTGAATGTTGTAGTCCGATAGTGT-GCGGCC 4085 Query 27092 GTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTT 27151 || || ||||| || |||||| | ||||||||||| ||||| || || | ||||| || Sbjct 4086 ATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGGATTCCCTCCTT 4145 Query 27152 ATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAACTTCTAGAGTTA 27210 || |||||| |||| |||| | ||||| | |||| || || || || || | Sbjct 4146 GTCCTGGATCTTTGCCTTCACATTTTCGATCGTGTCCGATGGC-TCGACCTCAAGTGTGA 4204 Query 27211 TAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | | ||||| || || |||||||| || || ||||| Sbjct 4205 TGGTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCAT 4241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424850698812144