Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2 158 2e-33 >seq2 Length=295332 Score = 158 bits (174), Expect = 2e-33 Identities = 521/796 (65%), Gaps = 27/796 (3%) Strand=Plus/Minus Query 110713 GTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGT 110772 ||| | |||||| || || || | ||||| || ||||| ||||| || || || || || Sbjct 211691 GTTCGATGTGTACGGCTCGAAAGACTCATTGTTGCCCAATATTTGCGCCGTTGAAGCGGT 211632 Query 110773 TGGCATTGGTGCCATCAAAAGACTG--TTACGAAGACCCTTCTCCTTG--ATGCGTTCCT 110828 ||||| || |||| ||| | || ||||||| || | || ||| || ||| | Sbjct 211631 CGGCATCGGAGCCA--AAAGTAATGAATTACGAATTCCGTGCT--TTGCTATCTTTTCTT 211576 Query 110829 TGAGAACATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAG 110886 | | | |||||| | ||| | | | |||| | |||| |||| || |||| | Sbjct 211575 TTAACTCGGCCCAGTTCCATAGATCCG-TCGGTTCCTTGTTCC-ACATTTCGTACTGTAA 211518 Query 110887 CACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAA 110946 || |||| | | ||| || ||| | || || || | ||| | ||| || || Sbjct 211517 TACGCCTTTGCTTACCGGACTTCCTTCATACGTCTCGTACGGACCGTCCCGTTCGGCTAA 211458 Query 110947 TTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTC 111006 || || ||||| ||||| | | | || ||||||||||| || | ||||| || Sbjct 211457 CTCGCAACTCGCTTCCAGCGCACCATAGTAAATGGTTTCAAATATTTGTTGATTCAGCTT 211398 Query 111007 CTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTG 111066 | ||| || || || | | ||||| ||||| ||| |||| || | |||||| Sbjct 211397 TTGGGCCTCTTCGCTTTCGTACGGATAGCGCATTAAAATGAATGCATCGGCCATACCTTG 211338 Query 111067 AACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGG 111123 ||||| | ||||| || ||||| ||||| ||||| ||| | ||| || || Sbjct 211337 CACACCGATTCCAATGGGCCTGTGGCGCATGTTAGAG---CGCTTCGCCTCCGGTACTGG 211281 Query 111124 ATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATG 111183 ||| | || | || || | | ||| ||||| || |||||||| | || ||| | Sbjct 211280 ATAGTAGTTGATATCGATTATTTTGTTCAGATTGCGCGTCACAATCTTAGCGACTTCCTT 211221 Query 111184 AAGTTTTTCATAATCAAAAGTGCGAGTCT--CTTCATTGACATACTTTGGAAGGGCGATT 111241 ||| ||| || |||| |||| | |||| ||| | |||| || |||||||| Sbjct 211220 AAGCTTTACAAAATCGTAAGT-CTTGTCTGTCTTTACGAACATGTTT----AGGGCGATC 211166 Query 111242 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAT 111301 || |||| ||| || || || | || || || || |||||||| ||| ||||| || Sbjct 211165 GAAGCCAGATTACACACTGCAATTTCGTCTTTCGATGAGTACTCTACAATCTCTGTGCAC 211106 Query 111302 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCC 111361 ||||| || | ||| || || || | ||||| ||| || || || ||||| |||||| Sbjct 211105 AAGTTAGAGCACTTTATGGTGCCAACATTCTGTTGATTGCTTTTACGATTGCATGCATCC 211046 Query 111362 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACA 111421 ||||| ||||| || || ||||| ||| ||| |||| | || || | ||| | | Sbjct 211045 TTGTACAGCATATACGGTACGCCCGTTTCCACCTGCGATTCAATGATTGCATACCACAAA 210986 Query 111422 TCGGCGGCTGGTACAATGGCG-TTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGC 111480 || || ||| || || || ||||||||| |||||| ||||| || | Sbjct 210985 TCCTGTGCCCTTAC-TTGTCGAATGAATCGTCCCTCCTTCTCGTAACGCGTGTACAGTGT 210927 Query 111481 TTCAAACTCCTCACCC 111496 || ||||| |||||| Sbjct 210926 CTCGAACTCTTCACCC 210911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627905121835200