Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2 147 3e-30 >seq2 Length=295332 Score = 147 bits (162), Expect = 3e-30 Identities = 612/944 (65%), Gaps = 35/944 (4%) Strand=Plus/Minus Query 117938 TTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTC-ATCT 117996 ||| |||||||| ||||| || ||||| || ||||| | ||| ||| || | | Sbjct 211940 TTGTGATTGATCAATGAATGCACCTCGATCGGCAGCCATTTTAATG-CATGTTTTTACCG 211882 Query 117997 TGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTT 118056 |||||||||||| || |||| |||| || || | ||| || | || ||| Sbjct 211881 AGATTTCCCACACTGTTTTGTACAGGTCACGGATCTCTTTTGGAATTGTTTCTATGCTTT 211822 Query 118057 GGATGGATCCACCCGCCTTGACCA--TGAGATCCTTCATATCCTTTGACCAGAGACCAAT 118114 ||||||||||| | ||| | || | ||||||||| ||| || || || Sbjct 211821 GGATGGATCCATTAT--TGGACAAGATGTTGTTCTTCATATCGAGATCCCACAGCCCCAT 211764 Query 118115 CTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCG 118174 | | ||||| | || |||||| | || || || ||||| |||| | || Sbjct 211763 CGCAGTCAGATCTTGCAGGAGATGATGGTTCACCACCTGGAACTCGCCCGACAACACACG 211704 Query 118175 TCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGC 118234 || ||| | || | ||||| ||||| || |||||||||| ||||| ||||| || Sbjct 211703 TCGATTATAAACGTTCGATGTGTACGGCTCGAAAGACTCATTGTTGCCCAATATTTGCGC 211644 Query 118235 TGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTT-TTCCCTAA 118293 || || || || ||||| || |||| || | ||||| | || | || ||| Sbjct 211643 CGTTGAAGCGGTCGGCATCGGAGCCAAAAGTAATGAATTACGAATTCCGTGCTTTGCTA- 211585 Query 118294 TGCGTTCCTTGAGAGCGTCCCAGT--CGTAGTTGAGCTTTGTCTCCCCCTGCCACATATC 118351 | ||| || | || |||||| | ||| | | | | ||| | |||||| || Sbjct 211584 TCTTTTCTTTTAACTCGGCCCAGTTCCATAGATCCG--TCGGTTCCTTGTTCCACATTTC 211527 Query 118352 AAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAAC 118411 |||| | | |||| | | || ||| ||| | ||||| || || || || Sbjct 211526 GTACTGTAATACGCCTTTGCTTACCGGACTTCCTTCATACGTCTCGTACGGACCGTCCCG 211467 Query 118412 CTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGC 118471 || || || ||| | ||||| || || || | | || || |||||||| || | Sbjct 211466 TTCGGCTAACTCGCAACTCGCTTCCAGCGCACCATAGTAAATGGTTTCAAATATTTGTTG 211407 Query 118472 ATTCATTGCCTT--GGCCTCGTCGGAATCAAACGCGAGTCGGCAC-AAAATAAATACATC 118528 ||||| || || |||||| ||| || ||| || ||| ||||| ||| |||| Sbjct 211406 ATTCA--GCTTTTGGGCCTCTTCGCTTTCGTACG-GATAGCGCATTAAAATGAATGCATC 211350 Query 118529 CGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGA---CTTC-CGAG 118584 || | |||||| ||||||| ||||| || | || | ||| ||||| |||| | Sbjct 211349 GGCCATACCTTGCACACCGATTCCAATGGGCCTGTGGCGCATGTTAGAGCGCTTCGCCTC 211290 Query 118585 CGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCT 118644 |||| || ||||| | || ||||||| | | || ||||| || |||| || Sbjct 211289 CGGT----ACTGGATAGTAGTTGATATCGATTATTTTGTTCAGATTGCGCGTCACAATCT 211234 Query 118645 TTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCT--CTTCATTGACATACTT 118702 | | || ||| | ||||||| | |||| || | | |||| ||| | |||| || Sbjct 211233 TAGCGACTTCCTTAAGCTTTACAAAATCGTAAGT-CTTGTCTGTCTTTACGAACATGTTT 211175 Query 118703 AGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTAT 118762 ||| ||||| || |||||||||||||| | | || || || | |||||||| Sbjct 211174 AGG----GCGATCGAAGCCAGATTACACACTGCAATTTCGTCTTTCGATGAGTACTCTAC 211119 Query 118763 AATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGT 118822 ||| || ||||||||||| || | ||| |||||||| | |||| |||||| | ||| Sbjct 211118 AATCTCTGTGCACAAGTTAGAGCACTTTATGGTGCCAACATTCTGTTGATT-GCTTTTAC 211060 Query 118823 G-TTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCC 118865 | || || ||||||||||| ||||| || || ||||| ||| Sbjct 211059 GATTGCATGCATCCTTGTACAGCATATACGGTACGCCCGTTTCC 211016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618310260628720