Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq3723 172 2e-37 seq565 111 5e-19 seq2602 93.3 1e-13 seq2303 93.3 1e-13 seq2296 93.3 1e-13 seq788 93.3 1e-13 seq6952 91.5 4e-13 seq4768 91.5 4e-13 seq1869 91.5 4e-13 seq1390 91.5 4e-13 seq38 91.5 4e-13 >seq3723 Length=15797 Score = 172 bits (190), Expect = 2e-37 Identities = 178/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 140505 TACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAA 140564 ||| |||||||||| | || || || ||||| || ||||| || || ||||| || || Sbjct 4009 TACTTACCACCACGGAGTCGCAGCACCAGATGGAGGGTAGATTCCTTCTGAATGTTGTAG 4068 Query 140565 TCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCA 140624 || |||| ||| || ||||| || || || || || || ||||| ||||| |||||||| Sbjct 4069 TCCGATAGTGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCT 4128 Query 140625 GGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGT 140684 || || ||||| || || ||||| || || || || ||||| || |||| || ||||| Sbjct 4129 GGGGGGATTCCCTCCTTGTCCTGGATCTTTGCCTTCACATTTTCGATCGTGTCCGATGGC 4188 Query 140685 TCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || |||||||| | ||||| ||||| || ||||| || ||||||||||| Sbjct 4189 TCGACCTCAAGTGTGATGGTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCAT 4241 >seq565 Length=48000 Score = 111 bits (122), Expect = 5e-19 Identities = 443/690 (64%), Gaps = 17/690 (2%) Strand=Plus/Plus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAA 349264 || || ||| | || || || || || || || | ||| | |||| | ||||||||| Sbjct 13358 GGTATTGATCTCGGCACGACGTACTCCTGCGTCGGTGTGTACAAAAACGGACGTGTAGAA 13417 Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTA---CCGAA 349321 || ||||| || |||||||||||| | | || ||||| ||||| ||||||| |||| Sbjct 13418 ATTATTGCCAACGATCAAGGTAACCGTATTACTCCATCGTACGTGGCATTTACCGCCGAT 13477 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTG-CTGCTAATCCAAAAAATAC 349380 || ||| | || |||||| | || || |||| ||||| | | || || |||| || Sbjct 13478 GGCGAACGTCTCATCGGTGATGCCGCCAAGAATC-AGCTGACGACGAACCCCGAAAACAC 13536 Query 349381 GGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGA 349440 || || ||||| ||||| | ||||| | || | ||| | | || || Sbjct 13537 CGTGTTCGATGCGAAGCGTTTGATTGGCCGCGAGTTCACCGACCATACGGTGCAGCACGA 13596 Query 349441 TCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGT 349500 | || | | ||| || | || | |||||| | |||||| || |||| Sbjct 13597 CATTAAGC-TGCTCCCGTTCAAGGTGATTGAAAAGAACTCG--AAACCACACATCAAGGT 13653 Query 349501 TGAATATAAAGG---TGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTT 349557 || | || | | || || || |||||||| || | ||||| | Sbjct 13654 ---ATCGACCGGCCAGGGCGATAAGGTGTTCGCGCCGGAAGAAATCTCCGCCATGGTGCT 13710 Query 349558 AGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTAT 349617 | ||| |||||||||| || ||||||||| | || | | || || |||| || | Sbjct 13711 GGGTAAGATGAAGGAAACGGCCGAAGCATATCTGGGCAAGAAGGTTACGCATGCGGTCGT 13770 Query 349618 TACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCAT 349677 || || || ||||| || || ||||| |||||| ||||| || ||||| || | || Sbjct 13771 CACGGTGCCGGCCTACTTCAACGATGCTCAGCGTCAGGCAACGAAGGATGCGGGAACGAT 13830 Query 349678 TGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGG 349737 || || | || | | || || || ||||| ||||| || || |||||||| || Sbjct 13831 CGCTGGACTGGTGGTGATGCGTATCATCAACGAACCGACTGCCGCCGCTATTGCATACGG 13890 Query 349738 GCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTAC 349797 || || || | | || | ||||| || | || | || ||| | || |||||||| Sbjct 13891 TCTGGACAAGAAGGATGGC---GAAAAGAACGTGCTCGTGTTCGATCTTGGCGGTGGTAC 13947 Query 349798 TTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGG 349857 || ||||| || || | || |||| | || | || || || || || || Sbjct 13948 CTTCGATGTGTCGCTGTTGACCATTGACAACGGTGTATTCGAGGTGGTGGCCACGAACGG 14007 Query 349858 TGATACACATCTTGGTGGAGAAGATTTTGA 349887 ||| || ||||| ||||| |||||||| || Sbjct 14008 TGACACTCATCTGGGTGGTGAAGATTTCGA 14037 >seq2602 Length=22077 Score = 93.3 bits (102), Expect = 1e-13 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 235887 TAGGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCA 235946 || |||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| Sbjct 18020 TACGGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCG 18079 Query 235947 AAACCCAGCATCTCCA 235962 | |||| ||||||||| Sbjct 18080 ATACCCGGCATCTCCA 18095 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | | Sbjct 5002 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 5061 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 5062 CCCGGCATCTCCA 5074 >seq2303 Length=31327 Score = 93.3 bits (102), Expect = 1e-13 Identities = 68/78 (87%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | | Sbjct 11020 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 11079 Query 235950 CCCAGCATCTCCATACAA 235967 ||| ||||||||| |||| Sbjct 11080 CCCGGCATCTCCA-ACAA 11096 >seq2296 Length=26362 Score = 93.3 bits (102), Expect = 1e-13 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | | Sbjct 12887 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 12946 Query 235950 CCCAGCATCTCCAT 235963 ||| |||||||||| Sbjct 12947 CCCGGCATCTCCAT 12960 >seq788 Length=40722 Score = 93.3 bits (102), Expect = 1e-13 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 235889 GGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAA 235948 ||||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | Sbjct 38170 GGGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGAT 38111 Query 235949 ACCCAGCATCTCCA 235962 |||| ||||||||| Sbjct 38110 ACCCGGCATCTCCA 38097 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | | Sbjct 3502 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 3561 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 3562 CCCGGCATCTCCA 3574 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | | Sbjct 4458 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 4399 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 4398 CCCGGCATCTCCA 4386 >seq6952 Length=7325 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | | Sbjct 1467 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 1408 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 1407 CCCGGCATCTCCA 1395 >seq4768 Length=18188 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | | Sbjct 7058 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 7117 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 7118 CCCGGCATCTCCA 7130 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | | Sbjct 9182 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 9123 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 9122 CCCGGCATCTCCA 9110 >seq1869 Length=25815 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | | Sbjct 15375 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 15434 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 15435 CCCGGCATCTCCA 15447 >seq1390 Length=27785 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||| ||||||||| |||||| | | Sbjct 5427 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACTGGGATCGATA 5368 Query 235950 CCCAGCATCTCCA 235962 ||||||||||||| Sbjct 5367 CCCAGCATCTCCA 5355 >seq38 Length=113840 Score = 91.5 bits (100), Expect = 4e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| ||| ||||||| ||||||||| ||||| |||||||||||||||| | | Sbjct 83935 GGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGATCGATA 83994 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 83995 CCCGGCATCTCCA 84007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514940627748086