Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq2 114 1e-20 seq5733 113 5e-20 >seq2 Length=295332 Score = 114 bits (126), Expect = 1e-20 Identities = 375/578 (65%), Gaps = 6/578 (1%) Strand=Plus/Plus Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162 || ||| || | || ||||| || ||| |||| || ||||| || ||| || || | Sbjct 210321 CCGCAGCACATGTTGATGCGCGTTGCGATCGGTATACATGGTGAAGACATCGATGCAGCC 210380 Query 19163 CGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTC 19222 |||||||||| || || | || | || || || || | |||||| | || Sbjct 210381 ATCGAGACATACAACTTGCTTTCGGAGCGTTATTTTACCCATGCCTCACCGACCATGTTT 210440 Query 19223 AACGCCGGTACGAACAAC--CCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATG 19280 || | |||| |||| || ||| |||| ||||| || | | ||| || | Sbjct 210441 GCGGCAGCTACG--CAACGTCCACAGCTGTCATCTTGTTTTCTGCTAACCATGTCTGACG 210498 Query 19281 ACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCG 19340 | || ||||| || ||||| || ||||| ||| |||| |||| || || || | | | Sbjct 210499 ATAGTATTGAAGGTATCTATGATACGCTAAAGCAGTGTGCGCTGATTTCAAAATCAGCAG 210558 Query 19341 GGGGTATCGGGATCCACTGCTCGAA-TATCCGGTCGAGTGGTACACGAATCAATGGGACG 19399 | || || ||| | | || || ||| || ||| || || ||| || ||| Sbjct 210559 GCGGAATTGGGCTGAA-TGTTCACTGTATTCGCGCGAAGGGAACGTACATCTCAGGCACG 210617 Query 19400 AACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTAC 19459 ||||| | | |||| | || || ||||| || || | ||||||||| ||| | || Sbjct 210618 AACGGGATTTCGAACGGGTTGGTACCGATGCTGCGAGTGTACAACAACACAGCCCGATAT 210677 Query 19460 GTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCAC 19519 || | ||||| ||| |||||| ||| | || ||||| |||||||| |||||||| Sbjct 210678 GTGGATCAGGGTGGCAACAAACGACCGGGAGCTTTTGCCATATACCTCGAACCATGGCAT 210737 Query 19520 GCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGT 19579 | || || | || || || || ||| ||| || | |||||| |||| Sbjct 210738 GGTGATGTATTCGAGTTTCTGGATCTGAAGAAAAACACCGGCAAGGAGGAGGTGCGTGCA 210797 Query 19580 CGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGAC 19639 || ||| | ||| || |||||||| ||||| || || ||| | ||| ||| || Sbjct 210798 CGTGACATGTTCTACGCTTTGTGGATACCGGATCTGTTTATGAAACGGGTAGAGGCTAAC 210857 Query 19640 GAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGG 19677 ||| ||| ||||||||||| ||||| || ||||| Sbjct 210858 GAAATGTGGAGTCTGATGTGCCCTCACGATTGTCCTGG 210895 Score = 87.8 bits (96), Expect = 2e-12 Identities = 258/395 (65%), Gaps = 6/395 (2%) Strand=Plus/Minus Query 79327 CCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATG 79386 || || || ||||| ||||||||||| ||| |||| ||| ||| | ||| Sbjct 210895 CCAGGACAATCGTGAGGGCACATCAGACTCCACATTTCGTTAGCCTCTACCCGTTTCATA 210836 Query 79387 AAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCC 79446 || || ||||| ||||||| || ||| | ||| || ||||| |||||| | ||| Sbjct 210835 AACAGATCCGGTATCCACAAAGCGTAGAACATGTCACGTGCACGCACCTCCTCCTTGCCG 210776 Query 79447 TGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATG 79506 ||| ||| || ||||| || | | || | ||||| || || || || ||| Sbjct 210775 GTGTTTTTCTTCAGATCCAGAAACTCGAATACATCACCATGCCATGGTTCGAGGTATATG 210716 Query 79507 GCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAA 79566 || || | ||| || ||| ||| ||||| | || || ||||| ||||||||| | Sbjct 210715 GCAAAAGCTCCCGGTCGTTTGTTGCCACCCTGATCCACATATCGGGCTGTGTTGTTGTAC 210656 Query 79567 ACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCG 79626 ||||| ||||| || || | |||| | | |||||||| || ||| || || Sbjct 210655 ACTCGCAGCATCGGTACCAACCCGTTCGAAATCCCGTTCGTGCCTGAGATGTACGTTCCC 210596 Query 79627 CTCGCCCGAAT---GTTCGAGCAGTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGC 79683 |||| ||||| || || || | | || || || || | | || || || || Sbjct 210595 TTCGCGCGAATACAGT--GAACA-TTCAGCCCAATTCCGCCTGCTGATTTTGAAATCAGC 210539 Query 79684 GCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGAT 79718 || |||| ||| ||||| || ||||| || || || Sbjct 210538 GCACACTGCTTTAGCGTATCATAGATACCTTCAAT 210504 >seq5733 Length=11217 Score = 113 bits (124), Expect = 5e-20 Identities = 169/233 (73%), Gaps = 9/233 (4%) Strand=Plus/Minus Query 59892 CTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAG 59951 |||||| |||||| || |||| || || || | || ||||| ||||| || | Sbjct 2595 CTGTTCAATGCCATTGAAACGTTGCCGTGCGTAAAGAAGAAGGCAGACTGGGCACTGAAC 2536 Query 59952 TGGAT---GAGTCCTGGAG--CATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGG 60006 ||||| ||| | | || || | || || ||||| || | || ||||| ||| | Sbjct 2535 TGGATCTCGAG-CAAGAAGGCCAACTTTGGCG-AACGTGTCGTGGCGTTTGCGGCCGTCG 2478 Query 60007 AAGGAATCTTCTTCTCTGGCTCGTTCTGT-GCTATTTTCTGGCTCAAAAAGCGTGGCCTC 60065 |||| ||||||||| || | | | || || |||||||||||||| ||||||||||| Sbjct 2477 AAGGCATCTTCTTCAGCGG-TAGCTTTGCCGCCATTTTCTGGCTCAAGAAGCGTGGCCTG 2419 Query 60066 ATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 |||||||| |||| ||||| |||||||||||||| || ||||| || || || Sbjct 2418 ATGCCGGGACTGACGTTCTCGAACGAGCTGATTTCGCGCGACGAAGGACTGCA 2366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548413984277280