Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq9121 120 3e-22 seq1735 109 6e-19 seq2 87.8 2e-12 seq5733 82.4 8e-11 >seq9121 Length=5000 Score = 120 bits (132), Expect = 3e-22 Identities = 235/342 (69%), Gaps = 9/342 (3%) Strand=Plus/Plus Query 158958 GTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGTTGGAGCATGAGCCA 159017 |||||| || || || ||||| ||||| || || || | ||| || | ||||||||| Sbjct 3783 GTGCGTTTCGCCCGTGGCAATTACAAAATCTTCCGGCTTGTCCTGCTGCATCATGAGCCA 3842 Query 159018 CATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCATCCATGTTCCCGAG 159077 ||| || ||||||||||| | ||||| |||||||| || || | ||||| || || || Sbjct 3843 CATCGCTTCGACGTAATCTTTGGCGTGGCCCCAGTCACGTTTCGAATCCAGATTGCCCAG 3902 Query 159078 CTCGATG-ACTTTTCCAGACTTTTTCCA---CTCAGCCAGACCGAGC--GTGATCTTGCG 159131 ||| | | | | || | | | | | || ||| ||||||| || || ||||| Sbjct 3903 CTCCAGGTATTCTTGCTGTC-CGAGCGATATCTTCGCC--ACCGAGCGGGTTATTTTGCG 3959 Query 159132 CGTCACAAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAACAGAATGCCGGTACAAGC 159191 || ||||| | | | || || || |||||| || ||||||||||| || | ||||| Sbjct 3960 TGTGACAAAATTTTCCCCCCGGCGCGGCGACTCGTGATTAAACAGAATCCCATTGCAAGC 4019 Query 159192 GAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCCAAAGAGCTTGGAGAC 159251 ||||| | || | ||||| || ||| | ||||||||||| | | ||| | Sbjct 4020 GAACATATCGTACGCTTCGCGATAGTTTATCACAATCCAGTATCCGTACATCTTCGCACA 4079 Query 159252 GCCGTATGGACTCCGAGGATAAAATGGTGTCCCCTCATTTTG 159293 | |||| || ||| ||||| ||||| ||| ||| || || Sbjct 4080 GGCGTACGGCGACCGTGGATAGAATGGAGTCTTCTCGTTCTG 4121 >seq1735 Length=22919 Score = 109 bits (120), Expect = 6e-19 Identities = 296/451 (66%), Gaps = 18/451 (4%) Strand=Plus/Plus Query 117150 ACCCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGA 117209 |||||||||| ||||| || ||||| || | ||| | |||||| | || || | || Sbjct 7095 ACCCAGTTCCAATACCATCAGCACCGTTGACCAGCAACATCGGTATGATCGGTAGATACC 7154 Query 117210 ACTCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCG 117269 | | ||||| | || || |||||| ||||| |||| || || ||| | Sbjct 7155 AGACCGGCTCGATGCGCTGATTATCGTCCAACTGGTACTCCAGCAGCGGATCGTCCAGTG 7214 Query 117270 GATCGAATATGTTCTTGGTCCACGGTGCTAGGCGA----GTGAAAATGTAACGAGAGCTT 117325 ||| ||| ||| ||| |||| || | | ||||||||||| | || || Sbjct 7215 GATGGAAAATGCAACGCGTCA---GTGC-AGACAACATTGTGAAAATGTACCTAGGACTA 7270 Query 117326 GCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTC 117385 || ||||| || || | | |||||||||||| || |||| ||| | | || || Sbjct 7271 GCGCTGTCCTTTCCGCCCGTCAAACGCGTACCGAACTGACCACCCGGATAGAGCAGATTG 7330 Query 117386 AGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCC 117445 | ||||||| || || |||| || ||||| ||||| ||||| ||| | | Sbjct 7331 ATGTTGTTGCTTCCGACGTAGTTCTGCGCCAAATTGACGATCGTCGAACAGAGCGACTGC 7390 Query 117446 TCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATG 117505 |||||||| || || || | | |||||| || | || || ||||| |||||||||| Sbjct 7391 TCACCATGATGGTAGGCAGATTTCTCCGCAACCGATCCAGCAAGCTGGGCCACCTTCACC 7450 Query 117506 TC-----TGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCT 117560 || || ||||| | ||||| ||||| | | ||||| || |||| |||| Sbjct 7451 TCACGCTTGTCGTCACG-----CTTGAAGCAGGTGAACAGTACCTTTCGTTGACCCGGCT 7505 Query 117561 TCAGACCATCCGCCACGTGAGGGATCGAACG 117591 ||| ||||||| || | || |||||||| Sbjct 7506 TCAAACCATCCAGCATGCACGGAATCGAACG 7536 Score = 93.3 bits (102), Expect = 5e-14 Identities = 292/447 (65%), Gaps = 14/447 (3%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || || || || || || |||||||||||||| | |||||| | || || || | Sbjct 7097 CCAGTTCCAATACCATCAGCACCGTTGACCAGCAACATCGGTATGATCGGTAGATACCAG 7156 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 ||||||| | | ||| || |||| | ||| | || | | || ||| ||| Sbjct 7157 ACCGGCTCGATGCGCTGATTATCGTCCAACTGGTACTCCAGCAGCGGATCGTCCAGTGGA 7216 Query 151996 TCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGCA 152055 | ||| || | || |||| | | ||| ||||| ||||| | | || || Sbjct 7217 TGGAAAATGCAACGCGTCAGTGCAGACAACATTGTGAAAATGTACCTAGGACTAGCGCTG 7276 Query 152056 TCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTG 152115 ||||| || || | || ||||| || ||||| ||| || | ||| || |||| |||| Sbjct 7277 TCCTTTCCGCCCGTCAAACGCGTACCGAACTGACCACCCGGATAGAGCAGATTGATGTTG 7336 Query 152116 TTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGT-GCCCTG-CAGACTCGCTTCAC 152173 ||| || ||| | ||||| |||||||| || ||||| | | | |||| || |||| Sbjct 7337 TTGCTTCCGACGTAGTTCTGCGCCAAATTGACGATCGTCGAACAGAGCGACT-GC-TCAC 7394 Query 152174 CGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC-- 152231 | || || || || | | |||||| | |||| || | ||| |||||||||| || Sbjct 7395 CATGATGGTAGGCAGATTTCTCCGCAACCGATCCAGCAAGCTGGGCCACCTTCACCTCAC 7454 Query 152232 ---CGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAA 152288 ||||||| | ||||| |||| | | | ||||| || || || ||||| Sbjct 7455 GCTTGTCGTCACG-----CTTGAAGCAGGTGAACAGTACCTTTCGTTGACCCGGCTTCAA 7509 Query 152289 ACCGTCCACCACGTGAGGAATCGAACG 152315 ||| |||| || | ||||||||||| Sbjct 7510 ACCATCCAGCATGCACGGAATCGAACG 7536 >seq2 Length=295332 Score = 87.8 bits (96), Expect = 2e-12 Identities = 178/259 (69%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 53498 GTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAG 53557 || || ||||| || || | ||||||||| ||||| || || | |||||||| || Sbjct 210639 GTACCGATGCTGCGAGTGTACAACAACACAGCCCGATATGTGGATCAGGGTGGCAACAAA 210698 Query 53558 CGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTC 53617 || ||| | || ||||| |||||||| || ||||| | || | | |||||||| Sbjct 210699 CGACCGGGAGCTTTTGCCATATACCTCGAACCATGGCATGGTGATGTATTCGAGTTTCTG 210758 Query 53618 GAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTT-TACAGCTC 53675 || ||| || || | || ||| |||| ||| |||||| |||| ||| ||| Sbjct 210759 GATCTGAAGAAAAACACCGGCAAGGAGGAGGTGCG-TGCACGTGACATGTTCTAC-GCTT 210816 Query 53676 TGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGT 53735 ||||||| ||||| || || ||| || ||| ||| |||| |||| ||||||| Sbjct 210817 TGTGGATACCGGATCTGTTTATGAAACGGGTAGAGGCTAACGAAATGTGGAGTCTGATGT 210876 Query 53736 GCCCGAACGAGTGCCCCGG 53754 |||| |||| || || || Sbjct 210877 GCCCTCACGATTGTCCTGG 210895 >seq5733 Length=11217 Score = 82.4 bits (90), Expect = 8e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG 74843 |||| || ||||| |||| || || ||||| || ||||||||||| | ||| || ||| Sbjct 2387 ATCAGCTCGTTCGAGAACGTCAGTCCCGGCATCAGGCCACGCTTCTTGAGCCAGAAAATG 2446 Query 74844 GCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTT 74901 || ||| ||| |||||||||||||||||||| |||||| || || | |||| Sbjct 2447 GCGGCAAAGCTACCGCTGAAGAAGATGCCTTCGACGGCCGCAAACGCCACGACACGTT 2504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547105448687600