Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq3723 172 6e-38 seq1402 158 1e-33 seq48 152 6e-32 seq5733 89.7 6e-13 seq1735 89.7 6e-13 >seq3723 Length=15797 Score = 172 bits (190), Expect = 6e-38 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| || || || || ||||| ||||||||||| || || |||||||| ||| || Sbjct 4244 ATCATGCAGATTTTCGTGAAAACGCTCACCGGCAAGACCATCACACTTGAGGTCGAGCCA 4185 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | || | |||| ||||||| || || ||||||||||||||||| || ||||| Sbjct 4184 TCGGACACGATCGAAAATGTGAAGGCAAAGATCCAGGACAAGGAGGGAATCCCCCCAGAT 4125 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||||||||| || || || || ||||| || ||||||| || || ||| | ||||| Sbjct 4124 CAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACACTATCGGACTAC 4065 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || | || |||||||| || || ||||| || |||| || || ||||| Sbjct 4064 AACATTCAGAAGGAATCTACCCTCCATCTGGTGCTGCGACTCCGTGGTGG 4015 >seq1402 Length=30251 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||| || || || || ||||| ||||| |||||||| ||| | Sbjct 9041 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCCTCG 9100 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| ||||||| || || ||||| |||||||| || || || || ||| Sbjct 9101 GATACGATCGAGAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCGCCGGATCAG 9160 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||| |||||||| || ||||| | ||| || || | ||||| || Sbjct 9161 CAGCGTCTGATCTTTGCCGGTAAGCAGCTGGAGGACGGTCGCACACTGTCCGACTACAAC 9220 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| ||||| ||||| || || | || || |||||||| Sbjct 9221 ATTCAGAAGGAGTCCACCCTTCACCTGGTGCTTCGCCTGCGCGGTGG 9267 >seq48 Length=116589 Score = 152 bits (168), Expect = 6e-32 Identities = 176/236 (75%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 27397 ATTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTT 27456 ||||| | |||||| ||||| || |||||||| || |||||||| || || || ||||| Sbjct 116322 ATTAC-AGAATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTC 116380 Query 27457 GAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCT 27516 ||| || || | || | || |||||||||| || |||||||||||||| |||||| Sbjct 116381 GAGCCATCGGACACGATCGAGAACGTGAAGGCTAAGATCCAGGACAAGGAGGGCATTCCT 116440 Query 27517 CCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCA 27576 ||||| ||||||||| | || || || |||||||| || || || | ||||| || | Sbjct 116441 CCAGATCAGCAGCGTTTGATCTTCGCCGGTAAGCAGCTGGAAGACGGACGTACTCTGTCC 116500 Query 27577 GACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| || |||| ||||| || || | || | ||| | ||||| || || || Sbjct 116501 GACTACAACATCCAGAAGGAGTCGACCTTGCACTTGGTCCTCCGTCTGCGTGGAGG 116556 >seq5733 Length=11217 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 64774 ATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATC 64833 ||||||||||| || ||||| ||||||||||| || ||| |||| |||||||||||||| Sbjct 2445 ATTTTCTGGCTCAAGAAGCGTGGCCTGATGCCGGGACTGACGTTCTCGAACGAGCTGATT 2386 Query 64834 TCTCGGGACGAGGGGCTCCACCAAGAATTTGC 64865 || || ||||| || || ||| || ||||| Sbjct 2385 TCGCGCGACGAAGGACTGCACTGCGACTTTGC 2354 >seq1735 Length=22919 Score = 89.7 bits (98), Expect = 6e-13 Identities = 180/267 (67%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 31177 GGGTCCAAAAAGTCTCGAATTACGGGAATTCCGAAGCTCGACGACGCCAACTGGGCCGGT 31236 || || || ||||| |||| ||| ||||||||||| || ||||| ||| || ||| Sbjct 8391 GGTTCGAAGAAGTCCAAGATTAAGGGTATTCCGAAGCTGGAAGACGCTAACGATGCGGGT 8332 Query 31237 ACCCACAAGTCGCACGAGTGCACGCTTATTATTACCGAGGGTGACTCGGCAAAGGCGCTT 31296 | | || || | | | || || || ||| | |||||||| || ||||| || || | Sbjct 8331 TCGCGTAATTCACTCAACTGTACACTCATTCTCACCGAGGGAGATTCGGCCAAAACGTTG 8272 Query 31297 GCTATTGCTGGCTTGAGTGTTGTGGGGCGCAATGCGTTCGGGGTGTTTCCGCTCCGAGGC 31356 || || | || ||| | || || || || || | | ||| ||||||||||| || || Sbjct 8271 GCCGTTTCCGGTTTGGGAGTGGTCGGTCGTGATACCTACGGAGTGTTTCCGCTGCGCGGT 8212 Query 31357 AAGCCGCGTAACGTTCGTGACGCCTCCGTTAAACAGGTTACGGATAATGAAGAGTTTTCC 31416 |||| | || || || || ||| | ||| || || ||| || | || || | Sbjct 8211 AAGCTGTTGAATGTGCGAGAAGCCACGCATAAGCAAATTTTGGAGAACGCCGAAATTAAC 8152 Query 31417 AACCTGAAAAAGATCCTCGGGCTTCAG 31443 ||||||| ||||| || || || ||| Sbjct 8151 AACCTGATCAAGATTCTTGGCCTACAG 8125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570195183041440