Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq3723 105 4e-18 seq1402 102 5e-17 seq48 89.7 3e-13 >seq3723 Length=15797 Score = 105 bits (116), Expect = 4e-18 Identities = 157/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || |||| ||||| |||||| || ||||| |||||||| || || || ||||| || Sbjct 4024 AGTCGCAGCACCAGATGGAGGGTAGATTCCTTCTGAATGTTGTAGTCCGATAGTGTGCGG 4083 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || ||||| || || | |||||| || || || || | ||||||| Sbjct 4084 CCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGGGATTCCCTCC 4143 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCT--CTCCACTTCCACGG 34666 ||||| ||||||| || | | || ||||| || | ||| || || | | Sbjct 4144 TTGTCCTGGATCTTTGCCTTCACATTTTCGATCGTGTC--CGATGGCTCGACCTCAAGTG 4201 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || || || ||||| | ||||||||| |||||||||||| Sbjct 4202 TGATGGTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCATG 4242 >seq1402 Length=30251 Score = 102 bits (112), Expect = 5e-17 Identities = 165/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| || | || || | ||||| || || ||| |||||| |||||||| || || | Sbjct 9269 CGCCACCGCGCAGGCGAAGCACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGG 9210 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 | ||||| || |||| || || || ||||||||||| || | |||||| || ||||||| Sbjct 9209 ACAGTGTGCGACCGTCCTCCAGCTGCTTACCGGCAAAGATCAGACGCTGCTGATCCGGCG 9150 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | | |||||||| || |||| || | || || | || || || | ||| Sbjct 9149 GGATGCCCTCCTTATCCTGGATC-TTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCG 9091 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 || || | ||| || || ||||| || | ||||| || || |||||||| |||| Sbjct 9090 ACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTGA 9036 >seq48 Length=116589 Score = 89.7 bits (98), Expect = 3e-13 Identities = 155/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || | || |||||| || ||||| || || || || || || Sbjct 116547 AGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGT 116488 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| || || |||||||| || || |||||||| || || || || | |||||| Sbjct 116487 CCGTCTTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCCTCC 116428 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCT--CTCCACTTCCACG 34665 ||||| |||| || | || ||| | || ||||| || | ||| || |||| Sbjct 116427 TTGTCCTGGATC-TTAGCCTTCACGTTCTCGATCGTGTC--CGATGGCTCGACCTCCAGC 116371 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || || | ||| ||||| || |||||||| Sbjct 116370 GTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 116330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314667606333746