Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2169 181 9e-41 seq48 140 3e-28 seq3723 123 2e-23 seq1402 118 9e-22 seq1141 86.0 5e-12 >seq2169 Length=21917 Score = 181 bits (200), Expect = 9e-41 Identities = 229/312 (73%), Gaps = 2/312 (1%) Strand=Plus/Plus Query 135461 ACGCATGACCCGTTGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCAC 135520 ||||| ||| |||||||| |||| || | |||| | ||| |||||||| |||||| Sbjct 3674 ACGCACGACGATCTGTGGAACTCGGCCCAGCTGCAGATGGTGCGGGAAGGCAAGATGCAC 3733 Query 135521 GGATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAG 135580 || ||| |||| ||||| ||||| || |||||| |||| ||| | | | || | ||| Sbjct 3734 GGCTTTCTGCGGATGTACTGGGCGAAGAAGATACTGGAGTGGACGAAAACACCGGAGGAG 3793 Query 135581 GCGCTACAACACG-CAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAA 135639 ||||| | | ||| | || | | | || ||| ||||| | ||||| |||||| | || Sbjct 3794 GCGCT-CGAGACGGCGATCTATCTGAACGATCGGTACAGCCTGGATGGGCGCGATCCGAA 3852 Query 135640 TGGCTACGTAGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCG 135699 || ||||| || || |||||||| || || |||||||||| |||||||||||||| Sbjct 3853 CGGGTACGTCGGGTGCATGTGGTCGATCGCGGGAATACACGATCAGGGATGGAAGGAGCG 3912 Query 135700 CAAAGTGTTTGGCAAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGT 135759 || | |||||||| ||||| || ||||||||||| || || | | |||||||| || Sbjct 3913 GGAAATTTTTGGCAAAATTCGTTACATGAACTATGAGGGCTGCAAGCGTAAATTTAACGT 3972 Query 135760 AAATTTGTACGT 135771 ||| || ||| Sbjct 3973 CAATGCGTTCGT 3984 >seq48 Length=116589 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || || || || || || || || Sbjct 116330 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACGCTGGAGGTCGAGCCATCG 116389 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| || || || || || ||||| || ||||| || || ||||| Sbjct 116390 GACACGATCGAGAACGTGAAGGCTAAGATCCAGGACAAGGAGGGCATTCCTCCAGATCAG 116449 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | |||||| || || |||||||| | || | ||||| |||||| Sbjct 116450 CAGCGTTTGATCTTCGCCGGTAAGCAGCTGGAAGACGGACGTACTCTGTCCGACTACAAC 116509 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||||| || ||||| | ||| |||| || || || Sbjct 116510 ATCCAGAAGGAGTCGACCTTGCACTTGGTCCTCCGTCTGCGTGGAGGTAT 116559 >seq3723 Length=15797 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || ||||| || ||||||||| | || || ||||| || || || || Sbjct 4242 CATGCAGATTTTCGTGAAAACGCTCACCGGCAAGACCATCACACTTGAGGTCGAGCCATC 4183 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| |||| || | || || ||| || || ||||| || || || || || ||||| Sbjct 4182 GGACACGATCGAAAATGTGAAGGCAAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCA 4123 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||||||||| || |||| || | || | || || ||||| Sbjct 4122 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACACTATCGGACTACAA 4063 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||| ||||| || ||| | ||| |||| |||| | || ||||| Sbjct 4062 CATTCAGAAGGAATCTACCCTCCATCTGGTGCTGCGACTCCGTGGTGG 4015 >seq1402 Length=30251 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || ||| | ||||| ||||| || || || || Sbjct 9041 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCCTCG 9100 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| |||| || || || || || || || || ||||| || || ||||| Sbjct 9101 GATACGATCGAGAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCGCCGGATCAG 9160 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||| || || |||| ||| || || | ||||| |||||| Sbjct 9161 CAGCGTCTGATCTTTGCCGGTAAGCAGCTGGAGGACGGTCGCACACTGTCCGACTACAAC 9220 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||| |||||||| ||| | || |||| | || |||| |||||| Sbjct 9221 ATTCAGAAGGAGTCCACCCTTCACCTGGTGCTTCGCCTGCGCGGTGGC 9268 >seq1141 Length=30375 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/121 (76%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 27093 ATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACC 27152 || || || ||||| |||||||| || | |||||| || || |||||||| | || Sbjct 30375 ATTCCTCCAGATCAGCAGCGTTTGATCTTCGCCGGTAAGCAGCTGGAAGACGGACGTACT 30316 Query 27153 GTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG--TTTGCGGG 27210 | ||||| |||||||| || |||||||||||||| || |||||| | || || ||||| Sbjct 30315 CTGTCCGACTACAACATCCAGAAGGAGTCGACCTTGCACTTGGTTCTTCGACTTCGCGGG 30256 Query 27211 G 27211 | Sbjct 30255 G 30255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434830535610240