Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1402 104 2e-17 seq3723 98.7 7e-16 seq13465 86.0 4e-12 >seq1402 Length=30251 Score = 104 bits (114), Expect = 2e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| |||||||||||||| || || || || || || || || || Sbjct 9038 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCC 9097 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 |||| || | || ||| | || | || || || || || || | ||||| || Sbjct 9098 TCGGATACGATCGAGAATGTGAAGGC-GAAGATCCAGGATAAGGAGGGCATCCCGCCGGA 9156 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| |||||| | || |||||||| || || ||||| |||| ||||| | ||| || Sbjct 9157 TCAGCAGCGTCTGATCTTTGCCGGTAAGCAGCTGGAGGACGGTCGCACACTGTCCGACTA 9216 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || |||||||| Sbjct 9217 CAACATTCAGAAGGAGTCCAC 9237 >seq3723 Length=15797 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| ||||| ||||| || || || ||||| || || || || | || Sbjct 4241 ATGCAGATTTTCGTGAAAACGCTCACCGGCAAGACCATCACACTTGAGGTCGAGCCATCG 4182 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || ||| || ||||| || || | || |||||||| Sbjct 4181 GACACGATCGAAAATGTGAAGGCAAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAG 4122 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || |||||||| || ||||| || | ||||| || || |||||| Sbjct 4121 CAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACACTATCGGACTACAAC 4062 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || || || Sbjct 4061 ATTCAGAAGGAATCTAC 4045 >seq13465 Length=2195 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/189 (71%), Gaps = 6/189 (3%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || |||||||| | ||||| |||||||| || || || |||| | | || Sbjct 821 ATGCAGATCTTTGTTAAAACTTTAACGGGTAAAACGATGACCCTTGATGTTGTCGCTTCG 762 Query 23671 GACACTGTT---GAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 || || ||| || || | ||||||||| || || |||||| | | ||||| Sbjct 761 GAAACGGTTTTGGACAT-TAAAAACAAAATCATG--GAACGCGAAGGTATTGCACCAGAC 705 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || |||||| | || |||||||||||||| | || || | || | | || |||||| Sbjct 704 CAGCAGCGTATTATTTTTGCCGGCAAACAGTTAGAGGAGGGTCGTATTATATCTGATTAC 645 Query 23788 AACATACAA 23796 || || ||| Sbjct 644 AATATCCAA 636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337943020770296