Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2 470 2e-127 >seq2 Length=295332 Score = 470 bits (520), Expect = 2e-127 Identities = 1225/1854 (66%), Gaps = 32/1854 (2%) Strand=Plus/Minus Query 76803 GCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 76862 || || || || || | ||| ||||| || || || | |||| |||| ||||||||| Sbjct 212053 GCCGGCTTGGTGCGCAAATAATACATGCCCGTCTTCAATCCCATCTTCCAGCCGTAGAAA 211994 Query 76863 TGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTT 76922 || || || || ||| ||| | || ||||||| || || || | ||| || | Sbjct 211993 TGGATCGACGTGAGCTTGCCATAGTTCGGCTCGGCTACGTGTATGTTGAACGATTGTGAT 211934 Query 76923 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 76982 ||||| ||||| || |||| ||| || |||||||| || || ||| | |||||| Sbjct 211933 TGATCAATGAATGCACCTCGATCGGCAGCCATTTTAATGCATGTTTTTACCGAGATTTCC 211874 Query 76983 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAG-GTTTGTAT--TTTGAATGGAA 77039 || | |||||| | | | ||| || | ||||| |||| ||| |||| ||||| Sbjct 211873 CACACTGTTTTGTACAGGTCACGGATCTCTTTTGGAATTGTTTCTATGCTTTGGATGGAT 211814 Query 77040 CCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAA 77099 ||| || || | || | ||||| ||||| || ||||| | || | || | | Sbjct 211813 CCATTATTGGACAAGATGTTGTTCTTCATATCGAGATCCCACAGCCCCATCGCAGTCAGA 211754 Query 77100 ACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAA 77159 || ||||||||| | || || | || || || || ||||| || | ||| | ||| Sbjct 211753 TCTTGCAGGAGATGATGGTTCACCACCTGGAACTCGCCCGACAACACACGTCGATTATAA 211694 Query 77160 ATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCA 77219 | || || || || || | ||| |||||||| ||||| ||||| || || ||||| Sbjct 211693 ACGTTCGATGTGTACGGCTCGAAAGACTCATTGTTGCCCAATATTTGCGCCGTTGAAGCG 211634 Query 77220 GTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTT 77279 || ||||| || |||| | ||| ||| | | || || || || || |||||| Sbjct 211633 GTCGGCATCGGAGCCAAAAGTAATGAATTACGAATTCCGTGCTTTGCTATCTTTTCTTTT 211574 Query 77280 AGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATT 77339 | | ||| | ||| ||||| | ||| | | ||| | ||||| |||| | Sbjct 211573 AACTCGGCCCAGTTCCATAGATCCGTCGGTTCCTTGTTCCACATTTCGTACTGTAATACG 211514 Query 77340 CCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCA 77399 || || || | ||| | ||| || || || || || || ||| |||| || Sbjct 211513 CCTTTGCTTACCGGACTTCCTTCATACGTCTCGTACGGACCGTCCCGTTCGGCTAACTCG 211454 Query 77400 CAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGT 77459 ||||||||||||| || || || ||||| ||||| || || | | ||| || | ||| Sbjct 211453 CAACTCGCTTCCAGCGCACCATAGTAAATGGTTTCAAATATTTGTTGATTCAGCTTTTGG 211394 Query 77460 GCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACT 77519 || || || || ||||||| | | | ||| || ||||| || | || || || Sbjct 211393 GCCTCTTCGCTTTCGTACGGATAGCGCATTAAAATGAATGCATCGGCCATACCTTGCACA 211334 Query 77520 CCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAA 77579 || || ||||| || || || | | | || || || || || || | ||||| || Sbjct 211333 CCGATTCCAATGGGCCTGTGGCGCATGTTAGAGCGCTTCGCCTCCGGTACTGGATAGTAG 211274 Query 77580 TTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTA 77639 || || || || ||||| || ||||| | || | ||| | || ||||| || || Sbjct 211273 TTGATATCGATTATTTTGTTCAGATTGCGCGTCACAATCTTAGCGACTTCCTTAAGCTTT 211214 Query 77640 AGAAAATC--AAATCTT--CCATCTATAACAAACATGTTCAAAGCTATAGATGCTAGATT 77695 | |||||| || |||| | ||| || | |||||||| | || || || || ||||| Sbjct 211213 ACAAAATCGTAAGTCTTGTCTGTCTTTA-CGAACATGTTTAGGGCGATCGAAGCCAGATT 211155 Query 77696 ACAAACTGCTACCTCAT-TAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTAC 77754 ||| ||||| | || | | || || || | || ||||| || || | ||| | Sbjct 211154 ACACACTGCAATTTCGTCTTTCGATGAG-TACTCTACAATCTCTGTGCACAAGTTAGAGC 211096 Query 77755 ATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAA 77814 | || || ||||| | ||| ||||| ||||| || |||||||| ||||| || || | Sbjct 211095 ACTTTATGGTGCCAACATTCTGTTGATTGCTTTTACGATTGCATGCATCCTTGTACAGCA 211036 Query 77815 TAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTT 77874 || |||| || ||||| | ||| ||||| || || | | ||| | | || Sbjct 211035 TATACGGTACGCCCGTTTCCACCTGCGATTCAATGATTGCATACCACAAATCCTGTGCCC 210976 Query 77875 TTA-TCATAGATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCA 77933 ||| | | || | | |||| | ||| | || || | || || || || || || Sbjct 210975 TTACTTGTCGAAT-GAATCGTCCCTCCTTCTCGTAACGCGTGTACAGTGTCTCGAACTCT 210917 Query 77934 TCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCA 77993 || |||||| || |||| ||||| || || | |||||||||| ||| || || Sbjct 210916 TCACCCCAAGTTTCCGCCAACCCAGGACAATCGTGAGGGCACATCA--GAC---TCCACA 210862 Query 77994 TCTTCCTTA------ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGA 78047 | ||| ||| || ||||||||||| ||||| |||||||| | ||| || | Sbjct 210861 T-TTCGTTAGCCTCTACCCGTTTCATAAACAGATCCGGTATCCACAAAGCGTAGAACATG 210803 Query 78048 TCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATA 78107 || || | | || || || || || || || || ||||| |||||||| | | | Sbjct 210802 TCACGTGCACGCACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCCAGAAACTCGAATACA 210743 Query 78108 TCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGA 78167 ||| |||||||||||| || ||||| || | | |||| |||||||| || || |||||| Sbjct 210742 TCACCATGCCATGGTTCGAGGTATATGGCAAAAGCTCCCGGTCGTTTGTTGCCACCCTGA 210683 Query 78168 TCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTT 78227 || | ||||| ||| ||||| || || |||| || ||| || | | ||||| || | Sbjct 210682 TCCACATATCGGGCTGTGTTGTTGTACACTCGCAGCATCGGTACCAACCCGTTCGAAATC 210623 Query 78228 CCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATAT----CCC 78283 || || || || || || || |||| | ||||||||| | || | || ||| Sbjct 210622 CCGTTCGTGCCTGAGATGTACGTTCCCTTCGCGCGAATA----CAGTGAACATTCAGCCC 210567 Query 78284 TATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTC 78343 ||||| ||||| || || || || || || | || | ||||| |||||||| || Sbjct 210566 AATTCCGCCTGCTGATTTTGAAATCAGCGCACACTGCTTTAGCGTATCATAGATACCTTC 210507 Query 78344 TATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCC 78403 ||||| || || |||| | || |||||||| |||| || || | || | Sbjct 210506 AATACTATCGTCAGACATGGTTAGCAGAAAACAAGATGACAGCTGTGGACGTTGCGTAGC 210447 Query 78404 TGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGT 78463 ||| ||| | ||||| || ||||| ||||| | || ||||| | |||||||| Sbjct 210446 TGCCGCAAACATGGTCGGTGAGGCATGGGTAAAATAACGCTCCGAAAGCAAGTTGTATGT 210387 Query 78464 TTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATG 78523 || || |||| || ||||| ||| || || | ||| || ||||||||||| || Sbjct 210386 CTCGATGGCTGCATCGATGTCTTCACCATGTATACCGATCGCAACGCGCATCAACATGTG 210327 Query 78524 CTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTT 78583 ||| || | |||||| ||||| || || |||||||| || || |||||| ||||| Sbjct 210326 CTGCGGACGTTCAACAATCTTACCCTTGATCTTCAACAAATAGGACCGTTCCAATGTTTT 210267 Query 78584 AAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAG 78637 || ||||| ||||||||| ||| || | |||||||| || | ||||| || Sbjct 210266 GAACCCAAAGTAGTTGTATCCAAAATCGCGATCGTAAATGATGGCCGAATTCAG 210213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694528459535680