Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20culicifacies_20[genbank_20GCA_5F000473375.1_202013-09- 30] 16,162 sequences; 202,998,806 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq48 165 2e-35 seq3723 163 6e-35 seq1402 163 6e-35 seq9121 134 3e-26 seq6906 86.0 1e-11 seq6437 86.0 1e-11 seq4604 86.0 1e-11 seq1770 86.0 1e-11 seq1573 86.0 1e-11 seq1488 86.0 1e-11 seq454 86.0 1e-11 seq27 86.0 1e-11 seq7 86.0 1e-11 seq1735 84.2 5e-11 >seq48 Length=116589 Score = 165 bits (182), Expect = 2e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| |||||||| || || |||| || || || || || |||||||||||||| | Sbjct 116557 ACCTCCACGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGA 116498 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || || || || || || || ||||| ||||||||||| || || || || Sbjct 116497 CAGAGTACGTCCGTCTTCCAGCTGCTTACCGGCGAAGATCAAACGCTGCTGATCTGGAGG 116438 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| || || ||| | ||||| |||||||| | ||||| Sbjct 116437 AATGCCCTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCGATCGTGTCCGATGGCTCGAC 116378 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || || ||||| ||||| || |||| ||||| ||||| ||||||||| Sbjct 116377 CTCCAGCGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCATT 116329 >seq3723 Length=15797 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||||||| | || ||| || || ||||||||||| | Sbjct 4014 ACCACCACGGAGTCGCAGCACCAGATGGAGGGTAGATTCCTTCTGAATGTTGTAGTCCGA 4073 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || ||||| ||||| | ||| || || || || Sbjct 4074 TAGTGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGGGG 4133 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| ||||||||||| || || | ||||| |||||||| | ||||| Sbjct 4134 GATTCCCTCCTTGTCCTGGATCTTTGCCTTCACATTTTCGATCGTGTCCGATGGCTCGAC 4193 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || || | || || ||||| |||||||| Sbjct 4194 CTCAAGTGTGATGGTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCAT 4241 >seq1402 Length=30251 Score = 163 bits (180), Expect = 6e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||||||||| ||||| || | ||| || || || ||||||||||| | Sbjct 9267 CCACCGCGCAGGCGAAGCACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 9208 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| || ||||| || || || ||||||||||||| ||| || || || ||| Sbjct 9207 AGTGTGCGACCGTCCTCCAGCTGCTTACCGGCAAAGATCAGACGCTGCTGATCCGGCGGG 9148 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||| || |||||||| || || || | ||||| || ||||| | ||||| Sbjct 9147 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 9088 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || || || ||||||||||| | || || ||||| |||||||| || Sbjct 9087 TCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTT 9038 >seq9121 Length=5000 Score = 134 bits (148), Expect = 3e-26 Identities = 328/485 (68%), Gaps = 14/485 (3%) Strand=Plus/Minus Query 43915 GTAGATGCTCTTGGTGTTCTGCGTTTGTTAGACGCAGTTCGTATAG-----CAGGTGTGA 43969 |||||||| | ||| || |||||| | ||||| |||||| || |||| | | Sbjct 4241 GTAGATGCCGTCGGTACGCTACGTTTGCTGGACGCCATTCGTACAGTCGGACAGGAGAAA 4182 Query 43970 ACTCTCGGATT-TGCCAAGCGTCGACATCGGAGTTGTACGGAAAGGTTCAGGAGATTCCT 44028 ||| || | || | |||||| || || || ||| ||||||||||||| |||| || Sbjct 4181 ACTGTCCGCTTCTACCAAGCATCCACGTCCGAGCTGTACGGAAAGGTGGCCGAGACACCG 4122 Query 44029 CAAACAGAAAGGACTCCGTTTTATCCCCGGAGTCCATATG-GTGTGGCGAAGCTATATGC 44087 || | || | |||||| || ||||| ||| || || | ||| |||||| | || | Sbjct 4121 CAGAACGAGAAGACTCCATTCTATCCACGGTCGCCGTACGCCTGT-GCGAAGATGTACGG 4063 Query 44088 CTATTGGATTTGTAAAAATTATCGCGAGTCGTATGGGATGTTCGTTTGTAATTCGATT-T 44146 || |||||| | ||| |||||||| |||| | ||||||| ||| ||| |||| | Sbjct 4062 ATACTGGATTGTGATAAACTATCGCGAAGCGTACGATATGTTCGCTTGCAATGGGATTCT 4003 Query 44147 GTTTCAATCACGAAAGTCCCAACAGAGGTCATCAGTTCGTGACTCGTAAAATCACGAAAG 44206 |||| |||||||| || | | || | | || || || || ||||| || Sbjct 4002 GTTT-AATCACGAGTCGCCGCGCCGGGGGGAAAATTTTGTCACACGCAAAATAACCCGCT 3944 Query 44207 CGGTTGCGAATATTTTCAACGGGACAG-AAAAATGCATGTATCTAGGAAACATAGACTCT 44265 |||| ||||| | | || |||||| || ||| | || | || || || | || || Sbjct 3943 CGGTGGCGAAGA-TATCGCTCGGACAGCAAGAATACCTGGAGCTGGGCAATCTGGATTCG 3885 Query 44266 AAAAGAGATTGGGGATATGCCTTGGATTATGTAGAAGCCATGTGGCTGATGTTGCAACAA 44325 ||| | || ||||| | ||| ||||| || ||||| |||||||| ||| |||| || Sbjct 3884 AAACGTGACTGGGGCCACGCCAAAGATTACGTCGAAGCGATGTGGCTCATGATGCAGCAG 3825 Query 44326 GACAGGTCAGACGACTACGTTATTGCAACTGGAAAGACG-ACGAGTGTCCGTGACTTTGT 44384 |||| | | || || | || ||||| || || | ||| || | || || || ||||| Sbjct 3824 GACAAGCCGGAAGATTTTGTAATTGCCACGGGCGAAACGCACTCG-GTGCGGGAGTTTGT 3766 Query 44385 AAAAA 44389 | ||| Sbjct 3765 AGAAA 3761 >seq6906 Length=7186 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 4652 TAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 4708 >seq6437 Length=7821 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 3189 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 3245 >seq4604 Length=10880 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 8873 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 8817 >seq1770 Length=25997 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 8719 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 8775 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 12532 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 12588 >seq1573 Length=24284 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 15507 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 15451 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 15972 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 15916 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 16128 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 16184 >seq1488 Length=35567 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 8208 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 8152 >seq454 Length=50808 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 35365 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 35421 >seq27 Length=129936 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 98708 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 98764 >seq7 Length=189452 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 135931 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 135875 >seq1735 Length=22919 Score = 84.2 bits (92), Expect = 5e-11 Identities = 199/298 (67%), Gaps = 2/298 (1%) Strand=Plus/Plus Query 273609 GGAACGTTCGTAGACCAACCGGTGCCAATACCGGAAGAACCATTCACCAGAATACTCGGG 273668 |||| || || | ||| || || |||||||| || ||| || ||||| | |||| Sbjct 7079 GGAATTTTGGTGGCCCACCCAGTTCCAATACCATCAGCACCGTTGACCAGCAACATCGGT 7138 Query 273669 ATAATTGGGACATAATATTCGGGCTCAATTTTATCACCATCGTCGTAAAGGTACTTCAAC 273728 || || || | ||| | | ||||| || | | |||||| | |||||| || | Sbjct 7139 ATGATCGGTAGATACCAGACCGGCTCGATGCGCTGATTATCGTCCAACTGGTACTCCAGC 7198 Query 273729 AAAGCATCATCCGTATCAACGAAAACCTTTCGCGTCTGAGGATTCAGTTTCGTGAAAATG 273788 | | ||| ||| | ||||| |||||| | | | || | ||||||||| Sbjct 7199 AGCGGATCGTCCAGTGGATGGAAAATGCAACGCGTCAGTGCAGACAACATTGTGAAAATG 7258 Query 273789 TACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACC-CTCGGG 273847 ||||| | ||| || |||||| || || || | || ||| |||||||| | ||| Sbjct 7259 TACCTAGGACTAGCGCTGTCCTTTCCGCCCGTCAAACGCGTACCGAACTGACCACCCGGA 7318 Query 273848 CAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTC 273905 || ||| || ||||||||||| |||||||| | ||| |||| ||| ||||| ||| Sbjct 7319 TAG-AGCAGATTGATGTTGTTGCTTCCGACGTAGTTCTGCGCCAAATTGACGATCGTC 7375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046522445825948