Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20] 2,220 sequences; 136,935,538 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq14 264 1e-65 seq673 163 3e-35 seq610 113 5e-20 seq122 113 5e-20 seq966 109 6e-19 >seq14 Length=264275 Score = 264 bits (292), Expect = 1e-65 Identities = 318/430 (74%), Gaps = 2/430 (0%) Strand=Plus/Minus Query 116946 TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCT 117005 |||| || |||||||||||| |||||||||| || ||||| || |||||| || || Sbjct 132540 TGTTCAATGCCATCGAGACGCTGCCGTGCGTGAAGCGTAAGGCGGACTGGGCGATGAACT 132481 Query 117006 GGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGG 117065 ||||| | ||| |||| || ||||||||| | ||||| ||||| |||||||||| Sbjct 132480 GGATCTCGAGCAAGAAGGCTAACTACGGCGAGCGTATCGTGGCGTTCGCAGCCGTCGAGG 132421 Query 117066 GCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGC 117125 | ||||||| ||||| || || ||||| || ||||| ||||| || ||||| |||| Sbjct 132420 GTATCTTCTTCAGTGGCAGCTTTGCTGCCATCTTCTGGCTAAAGAAGCGTGGCCTGATGC 132361 Query 117126 CCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTG 117185 | || ||||| ||| ||||||||| ||||| | || || ||| | ||||||||||||| Sbjct 132360 CGGGTCTGACGTTCTCCAACGAGCTGATCTCGCGCGATGAAGGTTTACATTGCGACTTTG 132301 Query 117186 CCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCG-GCGCGCGTCAGGGAGATC 117244 ||||| | |||||||| || |||| ||| ||| | |||| ||||| | ||| ||| Sbjct 132300 CCTGTCTCATGTTCAAGTATCTGGTACAGAAACC-ATCGCGCAAACGCGTAACGGATATC 132242 Query 117245 GTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTG 117304 || || || ||| ||||||||| ||||| || |||| ||||| || | || Sbjct 132241 ATCCGTGATGCAGTCATGATCGAGCAGGAGTTCCTGACGAAAGCACTGCCTGTCGATATG 132182 Query 117305 CTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTG 117364 |||| | |||||||| |||||||| |||||||||||||| || || | ||| || Sbjct 132181 TTGGGTATGAATTGCGAGCTCATGTCGCAGTACATCGAGTTCGTGGCGGATCGTCTGTTG 132122 Query 117365 CTCGAGCTGG 117374 | ||| ||| Sbjct 132121 GTGGAGTTGG 132112 >seq673 Length=25255 Score = 163 bits (180), Expect = 3e-35 Identities = 169/219 (77%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| ||||||||||| ||||| |||||||| |||| ||||| ||| Sbjct 24642 AAAATGCAGATTTTCGTGAAAACGCTCACCGGCAAGACCATCACACTCGAGGTCGA-GCC 24584 Query 40747 ACCG-ACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | || ||| | | | | | |||| || || | ||||| ||||| |||||| | || Sbjct 24583 ATCGGACACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCCCCAGA 24524 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| || || |||| ||| ||||| |||||||| |||| || ||||| ||||| Sbjct 24523 TCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGTACCCTTTCGGACTA 24464 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||||||| | || |||||||| ||| |||| Sbjct 24463 CAACATCCAGAAGGAGTCGACCCTGCATCTTGTGCTGCG 24425 >seq610 Length=159711 Score = 113 bits (124), Expect = 5e-20 Identities = 157/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || || || || || |||||||| | || ||||| ||| Sbjct 159114 AATATGCAGATTTTCGTGAAGACCCTGACAGGAAAGACCATCACTCTGGAGGTCGA-GCC 159172 Query 40747 A-CCGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 | |||| | | || |||| | |||| || |||| || || || |||||||| | | Sbjct 159173 ATCCGATACGATTGAGAACG-TGAAGGCTAAGATTCAGGATAAGGAAGGCATCCCTCCAG 159231 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 | ||||| || || |||| ||| || || |||||||| || | || || || ||||| Sbjct 159232 ATCAGCAGCGTCTTATCTTCGCTGGAAAGCAGCTGGAGGATGGTCGTACTCTGTCCGACT 159291 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||||||||||| | || || ||||| ||| Sbjct 159292 ACAACATCCAGAAGGAATCGACTCTCCATCTGGTG 159326 Score = 113 bits (124), Expect = 5e-20 Identities = 159/218 (73%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA- 40747 |||||| || ||||| || || || || || || |||||||| | || ||||| |||| Sbjct 159344 AATGCAGATTTTCGTGAAGACCCTGACAGGAAAGACCATCACTCTGGAGGTCGA-GCCAT 159402 Query 40748 CCGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||| | | || |||| | |||| || |||| || || || |||||||| | || Sbjct 159403 CCGATACGATTGAGAACG-TGAAGGCTAAGATTCAGGATAAGGAAGGCATCCCTCCAGAT 159461 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| || || |||||||| || | || || || ||||||| Sbjct 159462 CAGCAGCGTCTTATCTTCGCTGGAAAGCAGCTGGAGGATGGTCGTACTCTGTCCGACTAC 159521 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||||| | || || ||||| || |||| Sbjct 159522 AACATCCAGAAGGAATCGACTCTCCATCTGGTACTGCG 159559 >seq122 Length=254344 Score = 113 bits (124), Expect = 5e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||| | || ||||| || ||||| | || || || | | Sbjct 68678 ATGCAGATCTTCGTGAAGACGTTGACTGGCAAGACGATCACTCTGGAGGTGGAGCCTTCG 68619 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| |||||| || || | ||||| |||||||| ||| | || || Sbjct 68618 GATACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCA 68560 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| ||||| |||||||| |||| || ||||| |||||| || Sbjct 68559 GCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAAGACGGACGTACCCTGTCCGACTATAA 68500 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| | || ||||| Sbjct 68499 CATCCAGAAGGAGTCGACCCTGCA 68476 >seq966 Length=353950 Score = 109 bits (120), Expect = 6e-19 Identities = 155/213 (73%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA- 40747 |||||| || ||||| || || || || || || ||||||||| | || ||||| |||| Sbjct 223 AATGCAGATTTTCGTGAAGACCCTGACAGGAAAGACCATCACCCTGGAGGTCGA-GCCAT 281 Query 40748 CCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||| | | | |||| | |||| || |||| || || || ||||| || | || Sbjct 282 CCGATACAATTGAGAACG-TGAAGGCTAAGATTCAGGATAAGGAAGGCATTCCTCCAGAT 340 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| || || |||||||| || | || || || ||||||| Sbjct 341 CAGCAGCGTCTTATCTTCGCTGGAAAGCAGCTGGAGGATGGTCGTACGCTGTCCGACTAC 400 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||| ||||| | || || ||||||||| Sbjct 401 AACATCCAAAAGGAATCGACTCTCCATCTAGTG 433 Score = 100 bits (110), Expect = 3e-16 Identities = 149/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 40696 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-CCGACA- 40753 || ||||| || || || || || || |||||||| | || ||||| |||| |||| | Sbjct 2 ATTTTCGTGAAGACCCTGACAGGAAAGACCATCACTCTGGAGGTCGA-GCCATCCGATAC 60 Query 40754 GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAAC 40813 | || |||| | |||| || |||| || || || |||||||| | || ||||| | Sbjct 61 GATTGAGAACG-TGAAGGCTAAGATTCAGGATAAGGAAGGCATCCCTCCAGATCAGCAGC 119 Query 40814 GACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCC 40873 | || |||| ||| || || |||||||| || | || || || |||||||||||| | Sbjct 120 GTCTTATCTTCGCTGGAAAGCAGCTGGAGGATGGTCGTACTCTGTCCGACTACAACATTC 179 Query 40874 AGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||| | || || ||||| ||| Sbjct 180 AGAAGGAATCGACTCTCCATCTGGTG 205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515204902667200