Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20] 2,220 sequences; 136,935,538 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq673 116 3e-21 seq966 114 1e-20 seq610 113 4e-20 seq111 109 5e-19 seq1047 104 2e-17 seq122 98.7 9e-16 >seq673 Length=25255 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | || || ||| | || | || ||||| || || |||||||| || Sbjct 24411 TACCACCACGAAGTCGCAGCACAAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCG 24470 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || ||||| ||||| || || ||| |||| |||||||||||||| || | Sbjct 24471 AAAGGGTACGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGG 24530 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || ||||||||||| || || || || | |||| |||||||| ||||| Sbjct 24531 GGATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATGGTGTCCGATGGCTCGA 24590 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| || | || |||||||| || ||||| || ||||||||||| Sbjct 24591 CCTCGAGTGTGATGGTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCAT 24639 >seq966 Length=353950 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || || || ||||| |||||||| ||| || || || |||||| ||||| Sbjct 426 TGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGACAGCGTACGACCATCCTCCAGCTGC 367 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 ||||||||| |||| |||||||||||||| ||||| ||||| ||||| || ||| || Sbjct 366 TTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGGAATGCCTTCCTTATCCTGAATCTTA 307 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | || | || || | ||||||||| | ||| | || || || ||| Sbjct 306 GCCTTCACGTTCTCAATTGTATCGGATGGCTCGACCTCCAGGGTGATGGTCTTTCCTGTC 247 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 || || || || ||||||||||| Sbjct 246 AGGGTCTTCACGAAAATCTGCAT 224 Score = 109 bits (120), Expect = 5e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| |||| || || || || ||||||||||| ||| || ||| || |||||| Sbjct 205 CACCAGATGGAGAGTCGATTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATCCTC 146 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| ||||||||| |||| |||||||||||||| ||||| ||||| ||||| || Sbjct 145 CAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGGGATGCCTTCCTTATCCTG 86 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | || | || || | ||||||||| | || | || || Sbjct 85 AATCTTAGCCTTCACGTTCTCAATCGTATCGGATGGCTCGACCTCCAGAGTGATGGTCTT 26 Query 118709 GCCGGTCAGAGTTTTTACAAAAATC 118733 || ||||| || || || |||||| Sbjct 25 TCCTGTCAGGGTCTTCACGAAAATC 1 >seq610 Length=159711 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| |||| || || || || || |||||||| ||| || ||| || |||||| Sbjct 159326 CACCAGATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGACCATCCTC 159267 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| ||||||||| |||| |||||||||||||| ||||| ||||| ||||| || Sbjct 159266 CAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGGGATGCCTTCCTTATCCTG 159207 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | || | || || | ||||||||| | || | || || Sbjct 159206 AATCTTAGCCTTCACGTTCTCAATCGTATCGGATGGCTCGACCTCCAGAGTGATGGTCTT 159147 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || || ||||||||||| Sbjct 159146 TCCTGTCAGGGTCTTCACGAAAATCTGCAT 159117 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| |||| || || || || || |||||||| ||| || ||| || |||||| Sbjct 159553 ACCAGATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGACCATCCTCC 159494 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||||||| |||| |||||||||||||| ||||| ||||| ||||| || | Sbjct 159493 AGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGGGATGCCTTCCTTATCCTGA 159434 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | || || | ||||||||| | || | || || Sbjct 159433 ATCTTAGCCTTCACGTTCTCAATCGTATCGGATGGCTCGACCTCCAGAGTGATGGTCTTT 159374 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || || ||||||||||| Sbjct 159373 CCTGTCAGGGTCTTCACGAAAATCTGCAT 159345 >seq111 Length=461598 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| || | || || || || ||||| ||||| ||| || ||| || || Sbjct 359666 CAGCACCAGATGAAGCGTCGATTCCTTCTGAATATTGTAGTCGGACAGAGTACGTCCGTC 359725 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || |||||| |||| |||||||||||||| || || |||||||||||||| Sbjct 359726 TTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCCGGCGGAATGCCCTCCTTGTC 359785 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | |||| || |||| | ||||||||| | ||| | || Sbjct 359786 CTGGATCTTGGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTGATGGT 359845 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || ||||| || || |||||||| Sbjct 359846 CTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 359878 >seq1047 Length=31309 Score = 104 bits (114), Expect = 2e-17 Identities = 178/257 (69%), Gaps = 6/257 (2%) Strand=Plus/Plus Query 133080 ATCTCCCATGCCGTCTTGAAGAGATTCTTGACATGCTGTGGTATTTCGTCAATGTTCTGC 133139 |||||||| |||| ||| | ||||| || || || || ||||| || || || || Sbjct 16934 ATCTCCCAGACCGTTTTGTACAGATTGCGGATGTGTTGCGGAATTTCCTCTATCTTTTGT 16993 Query 133140 ACGGACCCGTTTTCGGCCAAAATCTTGTTGCGCAATTCCGGAGTGT---AAATGTCGAGA 133196 | || || |||| ||||| ||||||||| || ||| | || | | || | Sbjct 16994 ATTGAGCCATTTTGGGCCAGAATCTTGTTCTTCATTTC---ATCGTCCCACAGTTCCAAT 17050 Query 133197 TCGATTAGCGCTTTGACGAGATACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGT 133256 || |||| |||| | | || || || || |||||||||||||| | || || | Sbjct 17051 TCAGTTAGATCTTTTAGCAAATGATGATTCACTACTTGAAACTCGCCAGAAAGTACCCTA 17110 Query 133257 CTGAGATATACATTCGACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCC 133316 | || ||||| || ||| | ||||| |||||||||||||| |||||||| ||||| Sbjct 17111 CGATTGTAGACATTTGAAGTGTATGGTTCAAAAGATTCGTTGTTACCGAGTATTTGCGCA 17170 Query 133317 GTCGTCGCCGTGGGCAT 133333 |||| ||| || ||||| Sbjct 17171 GTCGACGCGGTCGGCAT 17187 Score = 86.0 bits (94), Expect = 5e-12 Identities = 203/305 (67%), Gaps = 4/305 (1%) Strand=Plus/Plus Query 134388 TTCGAAATCAACGCGGACTCGTGTAGAGTCTTGTAAATGCCATCGACGCTGTCGTCCTTG 134447 || || ||||| || ||| | ||||| | |||||| || |||| ||| |||||| Sbjct 18263 TTAGAGATCAAGGCACACTGTTTAAGAGTATCGTAAATTCCCTCGATGCTATCGTCCGAC 18322 Query 134448 ATGCTTTGCAGGAAACACGAACACATTTGTTGACGACGCGTACCCGCCGAAAACAGAGTC 134507 || | ||||||| || || ||| ||| | || | || | || | ||||| || Sbjct 18323 ATTGTGAGCAGGAAGCAGGACGACAGTTGCGGCCGTTGAGTTGCTGCAGCAAACATGGTT 18382 Query 134508 GGGCTCGCGTGCGTAAAGGT--GCCCAGACTCATCAACTGATATGTTTCAATGACGCTCT 134565 || |||||||||||| || | ||| | ||| | || || || ||| | | Sbjct 18383 GGCGAAGCGTGCGTAAAGTATCGCTCTGAC--AGCAAATTGTACGTCTCGATGGCAGAAT 18440 Query 134566 TAACGTCGTCGCCGTGAATGGCCAGAGCGACGCGCATGAGCATGTGTTGGGGTCTCTCCA 134625 || || || || || ||| | | ||| || ||||||||||||||||| || ||||||| Sbjct 18441 CAATATCTTCACCATGTATGCCGATAGCAACACGCATGAGCATGTGTTGCGGCCTCTCCA 18500 Query 134626 TGATCACGTCGTCGATTTTTAACAAATATCCATTGGTGAGGGTTTTGAAACCGAAATATT 134685 ||| | | |||||||||| |||| | | ||||||||||| || || | Sbjct 18501 CAATCTTCCCCTTAATTTTTAACAGATATGATCTTTCCAATGTTTTGAAACCAAAGTAAT 18560 Query 134686 TGTAA 134690 ||||| Sbjct 18561 TGTAA 18565 >seq122 Length=254344 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || || ||||| || ||| || || || || || Sbjct 68470 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAGTCGGACAGGGTACGTCCGTCTTCC 68529 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || ||| |||| | |||||||||||| || || |||||||||||||| Sbjct 68530 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 68589 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||| |||| ||| ||||| | || | ||| ||| Sbjct 68590 ATCTTGGCCTTGACGTTCTCGATGGTATCCGAAGGCTCCACCTCCAGAGTGATCGTCTTG 68649 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| || || || || |||||||| Sbjct 68650 CCAGTCAACGTCTTCACGAAGATCTGCAT 68678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433818662176240