Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20]
2,220 sequences; 136,935,538 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq111 109 6e-19
seq1638 107 2e-18
seq87 104 3e-17
seq892 100 3e-16
seq321 100 3e-16
seq1836 96.9 4e-15
seq1723 96.9 4e-15
seq1637 96.9 4e-15
seq833 96.9 4e-15
>seq111
Length=461598
Score = 109 bits (120), Expect = 6e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028
|||| ||||| ||| | || ||||| ||||||||||| || | |||||| || ||
Sbjct 359664 CGCAGCACCAGATGAAGCGTCGATTCCTTCTGAATATTGTAGTCGGACAGAGTACGTCCG 359723
Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088
|| || |||||||| |||||||| || || |||||||| || | ||| | || |||||||
Sbjct 359724 TCTTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCCGGCGGAATGCCCTCCTTG 359783
Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148
||| ||| || || | || | | ||| || | || || || | ||||||
Sbjct 359784 TCCTGGATCTTGGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTGATG 359843
Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| || ||||| || || || || ||||| |||||
Sbjct 359844 GTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 359878
>seq1638
Length=53948
Score = 107 bits (118), Expect = 2e-18
Identities = 79/92 (86%), Gaps = 4/92 (4%)
Strand=Plus/Plus
Query 60050 GTTTATGAAAA----ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACA 60105
||||| ||||| ||||||||| || | ||||||||||||| ||||||||||||||||
Sbjct 4124 GTTTAAGAAAAGAGTATTTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACA 4183
Query 60106 GGCGGACATACTCACCACTATACTACCGAGGA 60137
||||| ||||| |||||||||||| ||||||
Sbjct 4184 GGCGGGGATACTGACCACTATACTATCGAGGA 4215
>seq87
Length=924360
Score = 104 bits (114), Expect = 3e-17
Identities = 72/82 (88%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
|||||| | |||| || | ||||||||||||| ||||||||||||||||||||| ||||
Sbjct 253184 AAAAATCTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 253125
Query 60117 TCACCACTATACTACCGAGGAT 60138
| |||||||||||| |||||||
Sbjct 253124 TGACCACTATACTATCGAGGAT 253103
Score = 98.7 bits (108), Expect = 1e-15
Identities = 66/74 (89%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123
|||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||
Sbjct 253884 TTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 253825
Query 60124 TATACTACCGAGGA 60137
||||||| ||||||
Sbjct 253824 TATACTATCGAGGA 253811
Score = 96.9 bits (106), Expect = 4e-15
Identities = 67/76 (88%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121
|| ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||
Sbjct 251773 TTGTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACC 251832
Query 60122 ACTATACTACCGAGGA 60137
||||||||| ||||||
Sbjct 251833 ACTATACTATCGAGGA 251848
Score = 96.9 bits (106), Expect = 4e-15
Identities = 67/76 (88%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121
||| |||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||
Sbjct 254201 TTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACC 254260
Query 60122 ACTATACTACCGAGGA 60137
||||||||| ||||||
Sbjct 254261 ACTATACTATCGAGGA 254276
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 252343 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 252284
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 252283 TACTATCGAGGA 252272
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 254612 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 254553
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 254552 TACTATCGAGGA 254541
>seq892
Length=19077
Score = 100 bits (110), Expect = 3e-16
Identities = 72/82 (88%), Gaps = 1/82 (1%)
Strand=Plus/Plus
Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115
|||||| ||| ||| || | ||||||||||||| ||||||||||||||||||||| |||
Sbjct 926 AAAAATGTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 985
Query 60116 CTCACCACTATACTACCGAGGA 60137
|| |||||||||||| ||||||
Sbjct 986 CTGACCACTATACTATCGAGGA 1007
>seq321
Length=53978
Score = 100 bits (110), Expect = 3e-16
Identities = 72/82 (88%), Gaps = 1/82 (1%)
Strand=Plus/Minus
Query 60057 AAAAATT-TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115
||| ||| |||||| || | ||||||||||||| ||||||||||||||||||||| |||
Sbjct 1275 AAATATTCTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 1216
Query 60116 CTCACCACTATACTACCGAGGA 60137
|| |||||||||||| ||||||
Sbjct 1215 CTGACCACTATACTATCGAGGA 1194
>seq1836
Length=23313
Score = 96.9 bits (106), Expect = 4e-15
Identities = 67/76 (88%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122
|| |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||
Sbjct 23107 TTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCA 23048
Query 60123 CTATACTACCGAGGAT 60138
|||||||| |||||||
Sbjct 23047 CTATACTATCGAGGAT 23032
>seq1723
Length=33783
Score = 96.9 bits (106), Expect = 4e-15
Identities = 75/87 (86%), Gaps = 3/87 (3%)
Strand=Plus/Minus
Query 60061 ATTTTC--TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 60118
|||||| ||| || | ||||||||||||| ||||||||||||||||||||| |||||
Sbjct 32212 ATTTTCCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTT 32153
Query 60119 ACCACTATACTACCGAGGA-TTGAATA 60144
|||||||||||| |||||| ||| |||
Sbjct 32152 ACCACTATACTATCGAGGACTTGCATA 32126
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 29631 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 29690
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 29691 TACTATCGAGGA 29702
>seq1637
Length=183544
Score = 96.9 bits (106), Expect = 4e-15
Identities = 67/76 (88%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121
||| |||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||
Sbjct 656 TTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACC 597
Query 60122 ACTATACTACCGAGGA 60137
||||||||| ||||||
Sbjct 596 ACTATACTATCGAGGA 581
>seq833
Length=7226
Score = 96.9 bits (106), Expect = 4e-15
Identities = 67/76 (88%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121
||| |||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||
Sbjct 574 TTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACC 633
Query 60122 ACTATACTACCGAGGA 60137
||||||||| ||||||
Sbjct 634 ACTATACTATCGAGGA 649
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571801732061600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |