Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20] 2,220 sequences; 136,935,538 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq111 109 6e-19 seq1638 107 2e-18 seq87 104 3e-17 seq892 100 3e-16 seq321 100 3e-16 seq1836 96.9 4e-15 seq1723 96.9 4e-15 seq1637 96.9 4e-15 seq833 96.9 4e-15 >seq111 Length=461598 Score = 109 bits (120), Expect = 6e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| ||| | || ||||| ||||||||||| || | |||||| || || Sbjct 359664 CGCAGCACCAGATGAAGCGTCGATTCCTTCTGAATATTGTAGTCGGACAGAGTACGTCCG 359723 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| |||||||| || || |||||||| || | ||| | || ||||||| Sbjct 359724 TCTTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCCGGCGGAATGCCCTCCTTG 359783 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || || | || | | ||| || | || || || | |||||| Sbjct 359784 TCCTGGATCTTGGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTGATG 359843 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || ||||| || || || || ||||| ||||| Sbjct 359844 GTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 359878 >seq1638 Length=53948 Score = 107 bits (118), Expect = 2e-18 Identities = 79/92 (86%), Gaps = 4/92 (4%) Strand=Plus/Plus Query 60050 GTTTATGAAAA----ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACA 60105 ||||| ||||| ||||||||| || | ||||||||||||| |||||||||||||||| Sbjct 4124 GTTTAAGAAAAGAGTATTTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACA 4183 Query 60106 GGCGGACATACTCACCACTATACTACCGAGGA 60137 ||||| ||||| |||||||||||| |||||| Sbjct 4184 GGCGGGGATACTGACCACTATACTATCGAGGA 4215 >seq87 Length=924360 Score = 104 bits (114), Expect = 3e-17 Identities = 72/82 (88%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||| | |||| || | ||||||||||||| ||||||||||||||||||||| |||| Sbjct 253184 AAAAATCTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 253125 Query 60117 TCACCACTATACTACCGAGGAT 60138 | |||||||||||| ||||||| Sbjct 253124 TGACCACTATACTATCGAGGAT 253103 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 253884 TTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 253825 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 253824 TATACTATCGAGGA 253811 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 || ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||| Sbjct 251773 TTGTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACC 251832 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| |||||| Sbjct 251833 ACTATACTATCGAGGA 251848 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 ||| |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||| Sbjct 254201 TTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACC 254260 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| |||||| Sbjct 254261 ACTATACTATCGAGGA 254276 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 252343 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 252284 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 252283 TACTATCGAGGA 252272 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 254612 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 254553 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 254552 TACTATCGAGGA 254541 >seq892 Length=19077 Score = 100 bits (110), Expect = 3e-16 Identities = 72/82 (88%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||| ||| ||| || | ||||||||||||| ||||||||||||||||||||| ||| Sbjct 926 AAAAATGTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 985 Query 60116 CTCACCACTATACTACCGAGGA 60137 || |||||||||||| |||||| Sbjct 986 CTGACCACTATACTATCGAGGA 1007 >seq321 Length=53978 Score = 100 bits (110), Expect = 3e-16 Identities = 72/82 (88%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 60057 AAAAATT-TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 ||| ||| |||||| || | ||||||||||||| ||||||||||||||||||||| ||| Sbjct 1275 AAATATTCTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 1216 Query 60116 CTCACCACTATACTACCGAGGA 60137 || |||||||||||| |||||| Sbjct 1215 CTGACCACTATACTATCGAGGA 1194 >seq1836 Length=23313 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 23107 TTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCA 23048 Query 60123 CTATACTACCGAGGAT 60138 |||||||| ||||||| Sbjct 23047 CTATACTATCGAGGAT 23032 >seq1723 Length=33783 Score = 96.9 bits (106), Expect = 4e-15 Identities = 75/87 (86%), Gaps = 3/87 (3%) Strand=Plus/Minus Query 60061 ATTTTC--TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 60118 |||||| ||| || | ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 32212 ATTTTCCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTT 32153 Query 60119 ACCACTATACTACCGAGGA-TTGAATA 60144 |||||||||||| |||||| ||| ||| Sbjct 32152 ACCACTATACTATCGAGGACTTGCATA 32126 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 29631 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 29690 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 29691 TACTATCGAGGA 29702 >seq1637 Length=183544 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 ||| |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||| Sbjct 656 TTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACC 597 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| |||||| Sbjct 596 ACTATACTATCGAGGA 581 >seq833 Length=7226 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 ||| |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||| Sbjct 574 TTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACC 633 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| |||||| Sbjct 634 ACTATACTATCGAGGA 649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571801732061600