Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20] 2,220 sequences; 136,935,538 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq111 134 9e-27 seq673 116 2e-21 seq610 109 4e-19 seq966 100 2e-16 seq122 100 2e-16 >seq111 Length=461598 Score = 134 bits (148), Expect = 9e-27 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||||| || | || ||| ||||| || |||||||||||| Sbjct 359652 CCACCACGCAGGCGCAGCACCAGATGAAGCGTCGATTCCTTCTGAATATTGTAGTCGGAC 359711 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| |||| ||||||||| ||||| || || |||||||| || || Sbjct 359712 AGAGTACGTCCGTCTTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCCGGCGGA 359771 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | |||| ||| | | ||||| Sbjct 359772 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 359831 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCG 34391 || | |||||||| || || ||||| ||||| || ||||||||||||| Sbjct 359832 TCAAGGGTGATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCG 359880 >seq673 Length=25255 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | |||||| || || | || || ||||| ||||||||||| || Sbjct 24413 CCACCACGAAGTCGCAGCACAAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 24472 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| |||| |||| ||||||||| ||||| || || |||||||| || ||| Sbjct 24473 AGGGTACGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGG 24532 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | || | || | || | | ||||| Sbjct 24533 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATGGTGTCCGATGGCTCGACC 24592 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||||||||| |||||||| || |||||||| Sbjct 24593 TCGAGTGTGATGGTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCAT 24639 >seq610 Length=159711 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | |||||||| || | ||| ||| ||||| |||||||||||||| Sbjct 159344 TCCTCCACGGAGACGGAGCACCAGATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGA 159285 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| ||| | || |||| |||||| || ||||| || || |||||||| || || Sbjct 159284 CAGAGTACGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGG 159225 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||| || ||||| ||| | | | |||| ||||| | ||||| Sbjct 159224 GATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTCTCAATCGTATCGGATGGCTCGAC 159165 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| || || || || || ||||| || |||||||| Sbjct 159164 CTCCAGAGTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATCTGCAT 159117 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | ||| ||||| || | ||| ||| ||||| |||||||||||||| Sbjct 159572 TCCCCCACGAAGACGCAGTACCAGATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGA 159513 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| ||| | || |||| |||||| || ||||| || || |||||||| || || Sbjct 159512 CAGAGTACGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGG 159453 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||| || ||||| ||| | | | |||| ||||| | ||||| Sbjct 159452 GATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTCTCAATCGTATCGGATGGCTCGAC 159393 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| || || || || || ||||| || |||||||| Sbjct 159392 CTCCAGAGTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATCTGCAT 159345 >seq966 Length=353950 Score = 100 bits (110), Expect = 2e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | |||||||| || | ||| ||| ||||| |||||||||||||| Sbjct 223 TCCTCCACGAAGACGGAGCACCAGATGGAGAGTCGATTCCTTCTGAATGTTGTAGTCGGA 164 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| ||| | || |||| |||||| || ||||| || || |||||||| || || Sbjct 163 CAGAGTACGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGG 104 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||| || ||||| ||| | | | |||| ||||| | ||||| Sbjct 103 GATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTCTCAATCGTATCGGATGGCTCGAC 44 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATC 34384 |||| |||||||| || || || || || ||||| || ||| Sbjct 43 CTCCAGAGTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATC 1 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | ||||| || || | ||| ||| || || |||||||||||||| Sbjct 451 TCCCCCACGAAGACGGAGCACTAGATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGA 392 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 |||| ||| | || |||| |||||| || ||||| || || |||||||| || || Sbjct 391 CAGCGTACGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGG 332 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||| || ||||| ||| | | | || | ||||| | ||||| Sbjct 331 AATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTCTCAATTGTATCGGATGGCTCGAC 272 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| || || || || || ||||| || |||||||| Sbjct 271 CTCCAGGGTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATCTGCAT 224 >seq122 Length=254344 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || ||||| | || |||| ||| | || || ||||| ||||| |||||||| Sbjct 68451 TCCACCACGCAGACGGAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAGTCGGA 68510 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| ||| |||| |||| ||||||||| ||||| || | |||||||| || ||| Sbjct 68511 CAGGGTACGTCCGTCTTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 68570 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||| ||| | | | || | ||| | | || || Sbjct 68571 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCCGAAGGCTCCAC 68630 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||| || ||||| || | || ||||| ||||||||||| Sbjct 68631 CTCCAGAGTGATCGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 68678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323063258883200