Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20] 2,220 sequences; 136,935,538 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1047 432 5e-116 >seq1047 Length=31309 Score = 432 bits (478), Expect = 5e-116 Identities = 1236/1884 (66%), Gaps = 30/1884 (2%) Strand=Plus/Plus Query 62037 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62096 ||||| | |||||| ||||| | | || ||||| ||||||| ||| ||||| || Sbjct 16730 TTGTCAACTGTGAACTGAATCGCATTAACAGCTGGTTTGGTACGTAAATAATACATCCCG 16789 Query 62097 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62156 ||||| || || | |||| ||||| ||||| || |||||||| || | || Sbjct 16790 GTTTTAAGGCCCATCTTCCAGCCGTAGAAATGAATTGATGTTAGTTTACCGTAGTTTGGC 16849 Query 62157 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62216 || |||| || ||||| | ||| || ||| || ||||| ||||| | ||| || ||| Sbjct 16850 TCAGCTACGTGAATATTGAAAGACTGCGATTGGTCAATGAATGCTCCTCGGTCGGCCGCC 16909 Query 62217 ATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATC 62275 ||||| ||| || || | ||| ||||| | ||||| || | | || | | | Sbjct 16910 ATTTTGATGCAAGTTTTCACAGAAATCTCCCAGACCGTTTTGTACAGATTGCGGA-TGTG 16968 Query 62276 TTCTGGAAGGTT---TGTATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGAT 62332 || |||| | | | || || || || ||| | ||| |||| | ||||| || Sbjct 16969 TTGCGGAATTTCCTCTATCTTTTGTATTGAGCCATTTTGGGCCAGAATCTTGTTCTTCAT 17028 Query 62333 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTG 62392 ||||| | ||| | || || |||| | || | || | ||| | || |||||||| Sbjct 17029 TTCATCGTCCCACAGTTCCAATTCAGTTAGATCTTTTAGCAAATGATGATTCACTACTTG 17088 Query 62393 GAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTC 62452 || || ||||| | ||| || ||| |||| | ||| || || ||||| | || || Sbjct 17089 AAACTCGCCAGAAAGTACCCTACGATTGTAGACATTTGAAGTGTATGGTTCAAAAGATTC 17148 Query 62453 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATT 62512 || || || | ||||| ||||| || || ||||||||||| || | | | ||| Sbjct 17149 GTTGTTACCGAGTATTTGCGCAGTCGACGCGGTCGGCATAGGCGCTAAAAGCAGGGAATT 17208 Query 62513 TCTAAGACCGTATGTTCTGATTTTATCTTTTA-GATGTTCCCAATTCCAAAGATCCGACG 62571 | | || | ||| || || ||||||| | | |||||| ||| | |||| | Sbjct 17209 GCGCACGCCATGTGTCACAATATT-TCTTTTAAGCTCAGCCCAATCCCACAATTCCGTAG 17267 Query 62572 G-TACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGC-GTACGATCCTACATA 62629 | | | | || || || || || || || | | || ||| |||| Sbjct 17268 GCTTCTTCTCCCACATGTCG-TACTGAAGGATTCCTTTGCTAACTGGACT-TCCATCATA 17325 Query 62630 TGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATA 62689 || || ||||| || |||| | || | || || ||||| || | || ||| | || Sbjct 17326 TGATTCGTATGGACCATCCTGTGCGGCCAATTCGCAGCTCGCTTCAAGGGCTCCGAAGTA 17385 Query 62690 AATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATT 62749 |||||||||||| || | | ||| | || ||||| || || | || | Sbjct 17386 AATGGTTTCAAACATTTGTTGATTCAACAGCTGGGCTTCTTCACTTTCGTAAGGGTGGCG 17445 Query 62750 TAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 62809 | | || || || || || | ||||| || || || || || || | || | | | Sbjct 17446 CATCAAGATGAAAGCATCTGCCATGCCTTGCACTCCGATCCCTATCGGACGGTGGCGCAT 17505 Query 62810 ATTAGA--GATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62867 ||| || | ||| ||||| |||| |||||||||||| ||||| || ||||| || ||| Sbjct 17506 ATTGGATCGCTTT--GCTTCCGGAACAGGATAATAATTTATATCGATGATTTTGTTAAGA 17563 Query 62868 TTTCTGACAATTACTTTGACCACATCCTTCAG-TTTGAGAAAATCAAATCGCCCATC--- 62923 || | || |||| | || ||||| || |||| |||| ||| || | ||| Sbjct 17564 TTCTTAGTAACAGTTTTGGCTACTTCCTTTAGCTTTGCGAAA-TCATATGTACGATCGGG 17622 Query 62924 TATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATC 62983 | | ||||||||||| || |||| || ||||| |||||||| || | |||| | | Sbjct 17623 TTTCACAAACATGTTTAAGGCAATCGAGGCCAGGTTACACACAGCAATTTCAT---CTTT 17679 Query 62984 CGCA---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTG 63040 | | |||| || || || ||||| || || ||||||||| ||||| | |||||| Sbjct 17680 TGAAGAGTATTCTACAATTTCGGTGCACAGGTTTGAACACTTGATCGTTCCGATATTTTG 17739 Query 63041 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAAT 63100 || |||||||| || |||||||| || ||||| ||| | || |||||||||| Sbjct 17740 CTGGTTACTCTTACGATTGCACGCATCTTTGTAAAGCATGTAAGGCACTCCAGTTTCAAC 17799 Query 63101 CTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCT 63160 ||| ||||||||||| || ||| | || | ||||||| | | || | | | Sbjct 17800 CTGTGATTCTATAATTGCGAACCATAAATCTTGTGCCTTTACTTGACGGGTGAAACGACC 17859 Query 63161 TTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCT 63220 || | ||||| ||| || | | ||||||||| || ||||| | ||||| Sbjct 17860 CTCGCGCTCGTAGCCAGTGTAGAGTTTTTCGAACTCCTCACCCCATGTCTCCGACAATCC 17919 Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280 |||||| || | || ||||| | |||| | ||| | | ||| || | ||| || Sbjct 17920 AGGACAGTCGTGAGGGCACATTAGACTCCACATTTCGTTGGCTTCCACACGCTGCATGAA 17979 Query 63281 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340 | |||||||||||| || || || | || |||| | || || || || || Sbjct 17980 CAAATCAGGAATCCACAGCGCGTAGAACATGTCCCTTGCGCGGACCTCTTCTTTGCCAGT 18039 Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 |||||||| ||||| | ||| | | | ||| |||||| || |||| || || || Sbjct 18040 GTTCTTTTTTAGATCCAAAAACTCAAATACATCCCCATGCCATGGCTCCAGATAGATAGC 18099 Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460 | |||| || || ||||| ||||| || || | || | || || ||||| || || Sbjct 18100 AAAGGCTCCGGGTCGCTTGTTACCTCCTTGGTCAACATAACGTGCAGTATTATTGTAGAC 18159 Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACT 63520 | || ||| || | | |||||| || |||||||| || || | ||||| ||| | Sbjct 18160 GCGCAGCATCGGTACTAAACCGTTCGAAATACCATTCGTTCCTGCAATATATGTTCCTTT 18219 Query 63521 GGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63578 || | ||| | | ||| | | ||||| || || ||| ||||||||| || || Sbjct 18220 CGCCCTAATGCAGTGTACATTCA--GGCCTATGCCACCAGCCGATTTAGAGATCAAGGCA 18277 Query 63579 CATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAA 63638 || |||| | || || || || || || |||||||| || ||| | || || || Sbjct 18278 CACTGTTTAAGAGTATCGTAAATTCCCTCGATGCTATCGTCCGACATTGTGAGCAGGAAG 18337 Query 63639 CAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 63698 ||| |||| ||| | || |||| | ||| ||| | ||| || |||||||||||| Sbjct 18338 CAGGACGACAGTTGCGGCCGTTGAGTTGCTGCAGCAAACATGGTTGGCGAAGCGTGCGTA 18397 Query 63699 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGA 63758 || || || || || | |||||||||||| || || || || ||||| ||| Sbjct 18398 AAGTATCGCTCTGACAGCAAATTGTACGTCTCGATGGCAGAATCAATATCTTCACCATGT 18457 Query 63759 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATT 63818 || || | || |||||||| | |||||| || || || || ||||| || || ||| Sbjct 18458 ATGCCGATAGCAACACGCATGAGCATGTGTTGCGGCCTCTCCACAATCTTCCCCTTAATT 18517 Query 63819 TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 63878 || |||| || ||| ||||||| ||||| |||||||| || ||||| |||||| || Sbjct 18518 TTTAACAGATATGATCTTTCCAATGTTTTGAAACCAAAGTAATTGTAACCAAAGTCACGG 18577 Query 63879 TCGTAAATAATAACCGAATTGAGC 63902 ||||| || || | ||||| ||| Sbjct 18578 TCGTAGATGATCGCAGAATTAAGC 18601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629800122561600